Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f05
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    26   10.0 
AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    26   10.0 

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 96   VQLKEMRRNIYIKRRAEAEKASYDHY 173
            +QL E R   Y+ R+A+  + +Y HY
Sbjct: 2194 IQLPERRTREYLSRKAKLAEKNYVHY 2219


>Z49908-8|CAA90098.1|  153|Caenorhabditis elegans Hypothetical
           protein C07E3.9 protein.
          Length = 153

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 EKVTLNCWKWFPKAE 249
           +K+ + CWK FPK E
Sbjct: 120 DKIVVECWKKFPKPE 134


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 96   VQLKEMRRNIYIKRRAEAEKASYDHY 173
            +QL E R   Y+ R+A+  + +Y HY
Sbjct: 2194 IQLPERRTREYLSRKAKLAEKNYVHY 2219


>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 105 KEMRRNIYIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSSVAAV 272
           +  +RN  I+RR  ++K    +   +   L+EERE      E++ E    S  A++
Sbjct: 191 RSRKRNGRIERRVLSDKEKTKYESKVQMILDEEREKLCDKREMLKEDDGGSRRASL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,727
Number of Sequences: 27780
Number of extensions: 122349
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)