Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f01
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 541 INPVDRDLNIAYLASSCSKVRPFRFYHQ 458
           I+   +D+N  YL  S S  RP   Y Q
Sbjct: 13  ISNTPKDMNARYLPPSLSDTRPMLPYPQ 40


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 485 GSSIPLLSPNTELRSFEPAPQSV 417
           G  +  LS   ELR FEPA  +V
Sbjct: 427 GELLHALSDKPELRPFEPAVTAV 449


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 138 CRRVNHSKQCN**CNHYDYT 79
           C+R+ + KQC   C   DY+
Sbjct: 788 CKRIYNEKQCCKNCARVDYS 807


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +2

Query: 422 FAVPVQTIAILCLVIKAEWTNL*TTGSQIRYI*ISINRVYRMNV----HFCPTAIHEPS 586
           F +  QTI I+C+++++E          + YI   +  +Y  +V    H C + IHE S
Sbjct: 608 FLLITQTIFIICVIVQSEQ----IAWLHLLYI-FLVGIMYAADVFYICHVCCSTIHEVS 661


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 379 DDFDLIKQRVVPHTLCGAGSN 441
           DD  L+K     H+ C  GSN
Sbjct: 23  DDVLLVKSEPQLHSPCATGSN 43


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 460 QTQNCDRLNRHRKV 419
           +  NCD+L + RKV
Sbjct: 85  KVNNCDKLEKPRKV 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,872
Number of Sequences: 336
Number of extensions: 3133
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)