Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e24
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical pr...    36   0.025
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    34   0.077
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    34   0.077
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    31   0.72 
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81562-7|CAB04561.1|  367|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    27   6.7  
Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical
           protein C11H1.3 protein.
          Length = 529

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +3

Query: 246 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDE 425
           GI NK++E +  D  L    EC +      C+   R   + P      C H C+C++C +
Sbjct: 252 GIENKSVETMDDDSGL----ECII------CLSDIRDTVILP------CRHLCVCSNCAD 295

Query: 426 TVNV-DNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVGLLV 545
           ++    N CP C+S  R  ++ +   H   RN  +    LV
Sbjct: 296 SLRYKHNNCPICRSPFRALIRLRA--HRQTRNQIYETVSLV 334


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 390 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 494
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 401 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 437


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 390 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 494
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 581 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 617


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 345 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 485
           C   FA   + T L C H   C+DC    N+ + CP C+  I  +++
Sbjct: 564 CTICFAAPGSTTLLPCNHDGFCSDC---CNMMDHCPLCRKPIEERIQ 607


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 327 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDET-VNVDNTCPKCKS 464
           D  C  C   F V P +  + CGHS  C  C E+ +N++  CP C++
Sbjct: 5   DFCCAVCL-DFFVEPCI--IECGHS-YCRFCIESHLNINEKCPLCRA 47


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 390 CGHSCLCTDCDETVNVDNTCPKCKSGI 470
           CGH   C DC E V +   CP C+  I
Sbjct: 623 CGHRVACVDCTEKVAI-RRCPVCRQFI 648


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 294 PLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 470
           P+ +  ++ A+D+ C+ CR    V  +   L C H               TCP C++ I
Sbjct: 278 PVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 339 MRCRRSFAV-YPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGIR 473
           ++C   F V +  VT+L C HS +C  C    ++  + CP C++ +R
Sbjct: 24  VQCHICFQVNHEPVTFLTCKHS-ICAGCAGRWLSSCSVCPMCRTRVR 69


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 255 CECPQSQLHVCCSAAP*TPCSRA 187
           C C Q+     CS  P TPCS A
Sbjct: 38  CSCQQASQQYSCSCQPSTPCSCA 60


>Z81562-7|CAB04561.1|  367|Caenorhabditis elegans Hypothetical
           protein K03D7.11 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 488 VFQFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQIGNGGVNCETSS 348
           VF +  +A+FT  T  + V+  VAI     +    + NG +NC T +
Sbjct: 113 VFSYNVSASFTRITEKISVWLAVAIAVIRTLVMRYLVNGRINCWTDA 159


>U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical
           protein T12C9.1 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 333 ACMRCRRSF--AVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 461
           AC  C   F  +V  + TYL  G++    DCD TVN+   C  C+
Sbjct: 29  ACRACAAFFRRSVSQSKTYLCQGNN----DCDVTVNIRCMCRACR 69


>Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical
           protein T02C1.2 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +3

Query: 312 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGIRYKLKY 488
           N   +D   + C   + +      L C HS  C  C D+ + +   CP C+  + +  K 
Sbjct: 89  NSNDLDEDDVLCTICYDIIVEPHTLRCQHS-FCKKCIDQCLPLTRKCPSCQQWVYWSRKN 147

Query: 489 KTL*HVALR 515
           K      LR
Sbjct: 148 KIFKEKVLR 156


>U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical
           protein B0432.13 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 544 TSKPTRKSPFRRATCYKVLYFNLYLMPLLHLGHVLSTFTVSSQSVHKHECPQCR 383
           TS+PT       + C++ L  N  +  ++  GH+     +S     K +CP CR
Sbjct: 2   TSQPTSSLQGSCSICFEDLKQNDKISAIV-CGHIYHHGCISQWIATKRQCPSCR 54


>U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical
           protein C15B12.4 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  NYQRNFDSNLPQPPRSTTCTTVALRRKRFEFWLARYLR 165
           NYQR F S       S++ +T+  R+KRF   L+R L+
Sbjct: 506 NYQRVFSSGAGSSSVSSSSSTIFKRKKRFSV-LSRILK 542


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 378 TYLHCGHSCLCTDCDETVNVDNTCPKC 458
           T+L C    +C   D + +VD+ CP C
Sbjct: 63  TFLFCWPILICLCFDVSKDVDHNCPNC 89


>Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical
           protein C56A3.4 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +3

Query: 258 KTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETV-- 431
           +T+E I   +      +    +++ A ++C         V    C H C C  C++T   
Sbjct: 141 RTVEAIHGPKPPKAGVKSVEDSINEARLQCFLCKLTEKRVLLRPCNHLCFCEPCNDTFQK 200

Query: 432 NVDNTCPKC 458
            +   CP C
Sbjct: 201 QIPLLCPIC 209


>U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical
           protein R10A10.2 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 309 CNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 461
           C V  ++  C+RC+   +    V +  C HS       + +  +N CP C+
Sbjct: 53  CRVHLMEE-CLRCQSEPSAECYVVWGDCNHSFHHCCMTQWIRQNNRCPLCQ 102


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 383 IGNGGVNCETSSATHACTVDSLHIAFCVERQVSVGLNDFQRFVANAR 243
           +GNGG+N  +S  T A +  ++ IAF     VS  +  F+RF  N R
Sbjct: 515 LGNGGINLMSSIETFA-SYGTIFIAFVEVITVSY-VYGFKRFSVNIR 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,631
Number of Sequences: 27780
Number of extensions: 268993
Number of successful extensions: 840
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)