Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27e22
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 31 0.57
12_01_0008 + 63393-64004 29 2.3
11_01_0009 + 67344-67955 29 2.3
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 29 2.3
01_05_0490 + 22672241-22674679 29 2.3
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 27 7.1
09_03_0191 - 13322141-13322458,13322767-13323033,13324836-133250... 27 7.1
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 7.1
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 9.3
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 30.7 bits (66), Expect = 0.57
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 415 FYTEF*RFCSF---RKIVPAFAA*HLWRWWWP*RIVNMNLYNLIYSIIGTI 272
FYT + FC F RK +PA+ WRW++ V+ LY L+ S G +
Sbjct: 1329 FYTLWNLFCGFMIPRKRIPAW-----WRWYYWANPVSWTLYGLLTSQFGDL 1374
>12_01_0008 + 63393-64004
Length = 203
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 327 HGHHHRHKCYAANAGTILRKLQKRQ 401
H HHH H YAA A LQ++Q
Sbjct: 110 HHHHHHHHPYAAAAAAQSHHLQQQQ 134
>11_01_0009 + 67344-67955
Length = 203
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 327 HGHHHRHKCYAANAGTILRKLQKRQ 401
H HHH H YAA A LQ++Q
Sbjct: 110 HHHHHHHHPYAAAAAAQSHHLQQQQ 134
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 299 IVQIHIYDSSWPPPPPQML 355
+VQ I SSWPPPPP L
Sbjct: 401 LVQQPIAMSSWPPPPPVQL 419
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.7 bits (61), Expect = 2.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 314 IYDSSWPPPPPQMLRCKRW 370
+ +++ PPPPP + R +RW
Sbjct: 332 VEETTMPPPPPPLTRSRRW 350
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 332 PPPPPQMLRC 361
PPPPPQ LRC
Sbjct: 30 PPPPPQRLRC 39
>09_03_0191 -
13322141-13322458,13322767-13323033,13324836-13325048,
13325153-13325349,13325432-13325636
Length = 399
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 332 PPPPPQMLRC 361
PPPPPQ LRC
Sbjct: 7 PPPPPQRLRC 16
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 122 YMYVDDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYN 12
Y+Y+ +SEVS+ Y ++ R VI V S+ SLY+
Sbjct: 1012 YLYILESEVSQDYQSMA--SRQVIEVPSTSVGGSLYS 1046
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 293 NKIVQIHIYDSSWPPPPPQMLRCKRWYNFTKTAKTSKLGI 412
N + H+YD W P Q + R + F AK K+G+
Sbjct: 438 NSLANQHLYDVIW---PGQTAQTPRGWVFPSNAKELKIGV 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,111
Number of Sequences: 37544
Number of extensions: 193910
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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