Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e22
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    25   2.6  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   4.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   4.8  
Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    27   8.4  
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 24.6 bits (51), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 324 RHGHHHRH 347
           RHGHHH H
Sbjct: 412 RHGHHHHH 419



 Score = 22.2 bits (45), Expect(2) = 2.6
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 327 HGHHHRHKC 353
           H HHH H C
Sbjct: 415 HHHHHHHGC 423


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 200 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 57
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 200 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 57
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 200 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 57
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 310 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 356


>Z78540-2|CAB01737.1|  900|Caenorhabditis elegans Hypothetical
           protein C33G3.4 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 337 WWP*RIVNMNLYNLIYSIIGTIKLMHINFLNASILR 230
           WWP  +    LY+++ S+ G +K   I F    +++
Sbjct: 297 WWPNGMGEQKLYDVVVSMGGQVKEKKIGFKTVELVQ 332


>Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical
           protein F56H9.4 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 293 LFNNRNNKIDAHQFFERVDTAEAQIIKDSIYD 198
           L NN+N KI  H      DTA  Q++ D ++D
Sbjct: 348 LNNNKNRKIYQH-VTSATDTARIQVVIDMLFD 378


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 19/86 (22%), Positives = 43/86 (50%)
 Frame = -2

Query: 329 MTNRKYESVQSYLFNNRNNKIDAHQFFERVDTAEAQIIKDSIYDNTVLLNRDVFLNILKF 150
           M N K   ++  L     +++ +    + + +++ +  KDSI+D  V+ N D  ++ + F
Sbjct: 187 MKNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDE-VVSNADELVDDI-F 244

Query: 149 ANDVFDNKAYMYVDDSEVSRYYNAVV 72
            N V   K + Y ++   +R  +A++
Sbjct: 245 GNYVV-QKFFEYGEERHWARLVDAII 269


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 296 YLFNNRNNKIDAHQFFERVDTAEAQIIKD 210
           +LFN   N I A + F+R++ ++  +I++
Sbjct: 362 FLFNLLGNMITAKKMFQRIEPSQLNVIRE 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,936
Number of Sequences: 27780
Number of extensions: 191158
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)