Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e21
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   0.82 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   3.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   3.1  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.2  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 0.82
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 143 SEDENVLDFIIED 181
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 0.82
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 116 DIIVNAQINSEDEN 157
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 383 PLVQLYFGAVKHYCVKXVFAVLHQIAQNTI 294
           PL++L F A    C+K +  VL Q+   TI
Sbjct: 876 PLIRLVFAADPSLCIKYMSNVLDQLPAMTI 905


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 216 HIIKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYXLNAIMFNCAEIKLNKGPNVI 395
           +++  + +P + LL+   +++++ G  ++ CN +  G Y L  I+F   +  L+   + +
Sbjct: 613 YVLSSSKNP-MNLLF-TLHNSITDGKLNVHCNDIIPGRYHLKTIVFKLKDSVLSFQKDCL 670

Query: 396 -SNKNL 410
            SNK +
Sbjct: 671 HSNKQI 676


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 389 IWPLVQLYFGAVKHYCVKXVFAVLHQIAQNTIVAARHCRIGVFV 258
           ++PLVQ+  G +       +F +   I ++ I  +RH   GVF+
Sbjct: 464 VYPLVQIALGVIMSSPSSQLFPMRFHIIRSLIYLSRH--TGVFI 505


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 406  FLFEITFGPLFNFISAQLNIIALRXY 329
            +LF+ T+  LFN I + L +I +  Y
Sbjct: 1097 YLFDYTYVMLFNLIFSSLPVIVMGVY 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,224
Number of Sequences: 5004
Number of extensions: 30055
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)