Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e21
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542...    31   0.43 
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    27   5.3  
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562...    27   7.1  
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81...    27   7.1  
11_03_0131 + 10497674-10499617                                         27   9.3  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    27   9.3  

>11_04_0401 -
           17251759-17252208,17252545-17253022,17254235-17254290,
           17254489-17255019
          Length = 504

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 89  MANTSNITPDIIVNAQINSEDENVLDFIIEDEYYLKKTGRW 211
           +  TSN  P  +   +I  E+E+ ++ +IE+E  +KK G+W
Sbjct: 58  VGGTSNQGPAGLTEGEIVEEEEDAVEVVIEEE-EVKKVGQW 97


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 222 IKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYXLNAIMFN 356
           I V  S +L+LL    ++ +    Y   C +++ G Y +NA++FN
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN 717


>07_03_0806 +
           21654057-21655154,21655728-21655796,21656110-21656274,
           21656416-21656589,21659506-21659769,21659957-21660070
          Length = 627

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +1

Query: 184 ILLKKNGALAPIL------SRWLARRNLDCCTKTPILQC 282
           I+ KK   LAP +      SRW+ R +L+ C K   +QC
Sbjct: 412 IVEKKEHTLAPTIVHLLKKSRWIKRFSLEICPKKNHIQC 450


>06_01_0097 -
           810283-810296,810398-810521,810974-811066,811144-811236,
           811410-811514,811661-811732,811857-811934,812210-812379,
           812507-812741,812832-813074,813243-813338,813445-813582,
           814014-814139,814235-814453
          Length = 601

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 174 LKTNIT*KKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYXLNA 344
           +K N+   ++ VGA I++ A S  L+L+ KNA    S     +L N   N ++  NA
Sbjct: 484 IKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSN--DNFKFGYNA 538


>11_03_0131 + 10497674-10499617
          Length = 647

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +2

Query: 113 PDIIVNAQINSEDENVLDFIIEDEYYLKKTGRW 211
           P++     I+ ED++ ++ ++E++  + K G+W
Sbjct: 233 PEVFTEGVIDEEDDDAVEVVLEED-EIAKAGQW 264


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 276 AVSCGNYSILCNLVQNGEYXLNAIMFNCAEIKL 374
           + SC  Y  +  L+++GE  +  ++F  A IKL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,295
Number of Sequences: 37544
Number of extensions: 179109
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)