Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e20
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   3.6  
SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    25   4.8  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   6.3  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    24   8.4  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 172 NCIFPLFIIGPQIFVAVT 119
           N I+ LF++GP IF+  T
Sbjct: 5   NIIYALFLLGPSIFLKAT 22


>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +3

Query: 264 MNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFM 410
           ++++     M  L +R K  AW A   +  +  N+  S  +     +FM
Sbjct: 27  LSLVSTATCMAALFLRFKLIAWVAFILTFSNLLNANTSPSSSPTSMAFM 75


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 120 VTATNICGPIIKSGKMQLSPDPRRADRERRYKPPP 224
           ++ T +  P      ++L+  PRR  R R+Y P P
Sbjct: 81  ISTTTLAPP--SPSPLRLNEAPRRRGRPRKYPPKP 113


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 325 AHHFNLIIKPHIENTIPKI 269
           A   N+I+  HI NT+P+I
Sbjct: 295 ARKLNMILMHHIRNTLPEI 313


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 144 PIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAEDL 251
           P I  GK  +SP     D     +   PT+ P  DL
Sbjct: 135 PTIFEGKTVISPSSSGTDHSEAVEYTVPTAPPIPDL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,637
Number of Sequences: 5004
Number of extensions: 33549
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)