Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27e20
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28730-1|AAA68261.1| 113|Caenorhabditis elegans Hypothetical pr... 116 5e-27
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 28 2.4
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 2.4
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 2.4
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 28 3.1
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 27 5.5
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 27 5.5
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 27 5.5
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 27 7.2
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 27 7.2
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 27 7.2
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 26 9.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 26 9.5
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 26 9.5
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 26 9.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 26 9.5
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 26 9.5
>U28730-1|AAA68261.1| 113|Caenorhabditis elegans Hypothetical
protein K10B2.4 protein.
Length = 113
Score = 116 bits (280), Expect = 5e-27
Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 4/89 (4%)
Frame = +3
Query: 165 MQLSPDPRRADRERRYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAWT 332
MQ + DPRR +R RYKP T+ A +ED +YMN+LGM+FSMCGLM+R+KWC+W
Sbjct: 1 MQQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWL 60
Query: 333 AVFCSSISFANSRVSDDTKQIVSSFMLSI 419
A+ CS ISFAN+R SDD KQIVSSFMLS+
Sbjct: 61 ALVCSCISFANTRTSDDAKQIVSSFMLSV 89
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 180 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFS 290
D R ER PPPPT A+D T N+ G+ F+
Sbjct: 1111 DTVRQPTERDAPPPPPTQTKAQDEVT---NLPGLTFT 1144
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 72 EEQITKLTQIYSLLRRVTATNICGPIIKSGKMQ-LSPDPRRADRERRYKPPPPTSAP 239
EEQI + +I ++ ++ II +G ++ + DPR A K PPPT AP
Sbjct: 107 EEQIARAQRIQPVVDQIQRVE---QIILNGSVEDILKDPRFAVMADLTKEPPPTPAP 160
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 72 EEQITKLTQIYSLLRRVTATNICGPIIKSGKMQ-LSPDPRRADRERRYKPPPPTSAP 239
EEQI + +I ++ ++ II +G ++ + DPR A K PPPT AP
Sbjct: 107 EEQIARAQRIQPVVDQIQRVE---QIILNGSVEDILKDPRFAVMADLTKEPPPTPAP 160
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 186 RRADRERRYKPPPPTSAPAE 245
+R R+RRY P P TS+ AE
Sbjct: 89 KRTTRKRRYSPQPSTSSSAE 108
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 186 RRADRERRYKPPPPTSAPAE 245
+R R+RRY P P TS+ AE
Sbjct: 89 KRTTRKRRYSPQPSTSSSAE 108
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
protein F54C8.3 protein.
Length = 1027
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 46 KLHFNCIKQKNKLQNLPKF 102
KLH+NC+++K + NL +F
Sbjct: 119 KLHWNCVREKPFISNLGEF 137
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 225 PTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTK 389
P P D +T YMN+ F+ C R+ W A + C+ +AN DD K
Sbjct: 216 PIKTPPSDRST-YMNVN---FTGCDKSARVGWPACSTSECNKEEYANLIDLDDGK 266
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 46 KLHFNCIKQKNKLQNLPKF 102
KLH+NC+++K + NL +F
Sbjct: 119 KLHWNCVREKPFISNLGEF 137
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 66 KTEEQITKLTQIYSLLRRVTATNICGPIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAE 245
KTE+ I T + + R +T+ G +I + SP P + + P T AP
Sbjct: 859 KTED-IQTPTLAQNTVPRTISTDASGLVINTPASIASPSPAPSATDVASTTAPVTPAPTP 917
Query: 246 DLTTD 260
TTD
Sbjct: 918 TTTTD 922
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 66 KTEEQITKLTQIYSLLRRVTATNICGPIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAE 245
KTE+ I T + + R +T+ G +I + SP P + + P T AP
Sbjct: 859 KTED-IQTPTLAQNTVPRTISTDASGLVINTPASIASPSPAPSATDVASTTAPVTPAPTP 917
Query: 246 DLTTD 260
TTD
Sbjct: 918 TTTTD 922
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 141 GPIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAEDLTTDYMN 269
G + S + + P+ D RR +P PP P E + Y N
Sbjct: 347 GRRVSSFEDRKRPERGFQDSGRRRRPSPPRGRPGEKVVQSYRN 389
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 141 GPIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAEDLTTDYMN 269
G + S + + P+ D RR +P PP P E + Y N
Sbjct: 482 GRRVSSFEDRKRPERGFQDSGRRRRPSPPRGRPGEKVVQSYRN 524
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 141 GPIIKSGKMQLSPDPRRADRERRYKPPPPTSAPAEDLTTDYMN 269
G + S + + P+ D RR +P PP P E + Y N
Sbjct: 527 GRRVSSFEDRKRPERGFQDSGRRRRPSPPRGRPGEKVVQSYRN 569
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KSGKMQLSPDPRRADRERRYKPPPPTSAP 239
K G M SPD + R R +PPPP S P
Sbjct: 1902 KRGFMDRSPDS--SQRGRVCEPPPPPSPP 1928
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KSGKMQLSPDPRRADRERRYKPPPPTSAP 239
K G M SPD + R R +PPPP S P
Sbjct: 2486 KRGFMDRSPDS--SQRGRVCEPPPPPSPP 2512
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KSGKMQLSPDPRRADRERRYKPPPPTSAP 239
K G M SPD + R R +PPPP S P
Sbjct: 1902 KRGFMDRSPDS--SQRGRVCEPPPPPSPP 1928
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KSGKMQLSPDPRRADRERRYKPPPPTSAP 239
K G M SPD + R R +PPPP S P
Sbjct: 2486 KRGFMDRSPDS--SQRGRVCEPPPPPSPP 2512
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 102 YSLLRRVTATNICGPIIKSGKMQLSPDPRRADRERRYKPPPPT 230
YS LRR ++ P++ S + + SP P R + R PPT
Sbjct: 474 YSPLRRRQSS----PMVASPRRRRSPSPERQRKRRSPSDSPPT 512
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 102 YSLLRRVTATNICGPIIKSGKMQLSPDPRRADRERRYKPPPPT 230
YS LRR ++ P++ S + + SP P R + R PPT
Sbjct: 474 YSPLRRRQSS----PMVASPRRRRSPSPERQRKRRSPSDSPPT 512
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 153 KSGKMQLSPDPRRADRERRYKPPPPTSAP 239
K G M SPD + R R +PPPP S P
Sbjct: 2486 KRGFMDRSPDS--SQRGRVCEPPPPPSPP 2512
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 174 SPDPRRADRERRYKPPP---PTSAP 239
SPDP+RA RY PPP PT P
Sbjct: 159 SPDPKRAP---RYSPPPSSTPTPTP 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,597,975
Number of Sequences: 27780
Number of extensions: 196154
Number of successful extensions: 857
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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