Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e19
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   169   1e-42
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    31   0.35 
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   1.9  
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       28   4.3  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    28   4.3  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    28   4.3  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    28   4.3  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    27   9.9  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    27   9.9  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  169 bits (411), Expect = 1e-42
 Identities = 75/124 (60%), Positives = 103/124 (83%)
 Frame = +2

Query: 101 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 280
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 281 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 460
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 461 QENE 472
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +2

Query: 89  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 262
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 263 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 436
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 437 NAAARLRSQENE 472
                +   +NE
Sbjct: 121 GKTQFVAPLQNE 132


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -2

Query: 214  EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD-- 44
            E P +S+   T R++ +P  +++ +R+  ++ ++  FD+ R       HLV   + R+  
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117

Query: 43   SEPRGDT 23
              PRG T
Sbjct: 1118 ENPRGIT 1124


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +2

Query: 89  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 262
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 263 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 436
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 437 NAA 445
             A
Sbjct: 121 FVA 123


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 221 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 343
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 79  YSHLVCFFKKRDSEPRGDTAARE 11
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 79  YSHLVCFFKKRDSEPRGDTAARE 11
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 79  YSHLVCFFKKRDSEPRGDTAARE 11
           YSHL  +F + D  PR   AARE
Sbjct: 229 YSHLADYFPEYDGPPRDPIAARE 251


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 79  YSHLVCFFKKRDSEPRGDTAARE 11
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 67  QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 171
           QD  K   + D+RQKE  E Y+  IGS+ +  E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 56  KETYKMAIRPVYRPTIVKKRTKR-FIRHQSDRYDKLKRNWRKPRGIDNRVRRR 211
           K+ +  A++P +R TI+ +R K   ++   DRY K K+ + K   +    +RR
Sbjct: 387 KKKHMTALKP-WRDTILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRR 438


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 460 GAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVLPVLHHQDF 323
           G E +G   H  A  LG FH Q+   R D ++     +P    Q+F
Sbjct: 282 GCEVTGTAAHEIAHTLGLFHTQMRSDRDDYVTIDLTDVPESSQQNF 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,962
Number of Sequences: 27780
Number of extensions: 225581
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)