Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e16
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   1.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.2  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   3.8  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   5.0  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   5.0  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.7  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 208  AAKHLGTSVELI--ASDVLDHYRTFALLERLLTVPSKLTEQMIFQ 336
            A + LG S E I  A DV++ YR  A+L  L+ +    T+  +F+
Sbjct: 1117 ADEELGWSAEQICLADDVINEYRRKAILCNLMALSLPFTQDKLFK 1161


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 115 SNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKH 219
           S YT++ P++ ++ ++      A  T H R +AKH
Sbjct: 503 SAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAKH 537


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 289 RLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELL 411
           RL+    + T  +  +L+      LI+KYY  D+++  ELL
Sbjct: 57  RLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELL 97


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 152 NWYISGS-ISV*LLTNTSTSVYIFLLFVLTYLFFNFAFLFNRYLF*CI 12
           N  ISG+ +S    TN     Y+F    L   FF   FLF++  F CI
Sbjct: 157 NLIISGANLSRDYFTNRKDRYYLFSDKGLADFFFKTHFLFSQLSFECI 204


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 508 VRRVFKAVEEMPGNVVANIRSTFLLSDPLAKKYGA 612
           VR +F ++ ++  ++      TF  SDP  KKY A
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAA 248


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 540 HLFHCLEHSTHVVE--LTTTASQRRA 469
           H+   LEH +HV+   LTT  SQ  A
Sbjct: 29  HILRHLEHESHVINSTLTTLISQENA 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,542
Number of Sequences: 5004
Number of extensions: 50367
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)