Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27e16
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 30 1.7
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 29 2.2
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611... 29 3.9
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 5.1
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 28 6.8
07_03_0148 - 14448475-14449053 28 6.8
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 28 6.8
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 384 QVIIFLYEHVFRLFVQLEDHLLCQL*WYR-EQPLKQCKSSVMIEYIAGYQLYRCS 223
Q+++ L + L +LED + L + E+PL+ K ++ I Y++ Y++ CS
Sbjct: 145 QLLVALGHRILELVEKLEDFDIILLPSFELERPLQLAKEAIGIMYLSPYEVGTCS 199
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/106 (24%), Positives = 48/106 (45%)
Frame = +1
Query: 118 NYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVELIASDVLDHYRTFALLERLL 297
N + + P I W+E C A LH K+ +V +IA H +T A+L+ L+
Sbjct: 188 NSSSVVPCILPPWLESCQIPSAAEELHSIMCNKNNIRNVLVIAD--AGHGKT-AILDSLV 244
Query: 298 TVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELLGRKLSSRH 435
+ +T Q + + + LI YY++ + +R ++ + H
Sbjct: 245 AT-AGITSQEVTE-----SNSLISLYYEMPEDSLRSYKDKRAGNGH 284
>01_01_0788 +
6111890-6112002,6112121-6112265,6113012-6113086,
6114171-6114250,6115500-6115569,6115664-6115759,
6116633-6116756,6116921-6116967,6117044-6117127,
6117199-6117252,6117451-6117551,6118744-6118834,
6119989-6120153,6121341-6121412,6122025-6122111,
6122899-6122952,6122992-6123062,6123882-6124029
Length = 558
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 292 LLTVPSKLTEQMIFQLDEQTKHMLIEKY---YDLDDAVIRELLGRKLSSRHRKDLDEVAE 462
+L +KLT + FQ+ E + + + D+A +R K R+ L + +
Sbjct: 395 ILDEDAKLTVPLGFQVAEIPLSVWVSMRGVKKEFDEAKLRFAAAEKKVIDIREQLVRIIK 454
Query: 463 RSGAPLRCCRRQFDNVRRVFKA 528
R G PL C R + VR+ A
Sbjct: 455 RFGIPLTSCDRDMEAVRKAIIA 476
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 367 EKYYDLDDAVIR--ELLGRKLSSRHRKDLDEVAERSGAPLRCCRRQFDN 507
EKY +DA++ EL ++L+S+++ + S P RR+FDN
Sbjct: 117 EKYARREDAILHALELERKQLASKYQNQGFRSDDISSVPFADMRREFDN 165
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 235 ELIASDVLDHYRTFALLERLLT-VPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELL 411
+L ++DVL +R F +L R L + +K E T H L E ++L + ++ +L
Sbjct: 68 QLQSADVLASHRVFMVLFRTLKELSTKRLAVDQRNYAEITSH-LFEYTWNLWKSDVQTIL 126
Query: 412 GRKLSSRHRKDLDEVAERSGAPLRCCRR 495
R D+D + E+S + C R
Sbjct: 127 QNLSMLSQRSDIDSILEQSNDLMLICDR 154
>07_03_0148 - 14448475-14449053
Length = 192
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 589 GRTARMCFLYWRPRFRASLPLP*TLYARCRTD--DDSIAEARPSVPPPHL 446
GRT+R+ WR R+ PL T D + + E+ S+PPP L
Sbjct: 104 GRTSRIMKHRWRELRRSGFPLAATARKVQALDMVESEVEESDQSLPPPEL 153
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 385 DDAVIRELLGRKLSSRHRKDLDEVAERSGAPLRCCR 492
D + +R GR+ + R R D+DE +E G LRC +
Sbjct: 482 DPSKLRVKKGRRRTRRIRNDMDE-SEAGGRTLRCSK 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,352
Number of Sequences: 37544
Number of extensions: 342570
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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