Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27e16
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.1
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 30 1.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 30 1.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 30 1.5
AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical ... 28 4.6
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 27 8.1
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 277 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 447
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 22 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81
Query: 448 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 573
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 82 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 277 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 447
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 62 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 121
Query: 448 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 573
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 122 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 160
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 277 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 447
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 22 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81
Query: 448 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 573
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 82 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 136 PEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVEL 240
PE Y L +GC S E + RG A+H T+ L
Sbjct: 752 PETYVLHHDGCVSPEEAARRKARGKARHEATTARL 786
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 136 PEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVEL 240
PE Y L +GC S E + RG A+H T+ L
Sbjct: 849 PETYVLHHDGCVSPEEAARRKARGKARHEATTARL 883
>AL023847-4|CAA19550.1| 349|Caenorhabditis elegans Hypothetical
protein Y57A10C.8 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 150 LVYFRIDQCIITNEYINFCVHFFVI 76
+VY D C + ++FC++FF+I
Sbjct: 31 MVYLVTDVCCLVAAVLSFCINFFII 55
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +1
Query: 127 LIDPEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVELIASDVLDHYRTFALLERLLTVP 306
L PE Y LW++ + V T Q AK + + AS D + R
Sbjct: 400 LKSPEEYNLWVKESDFTHKVVTQQQEWKAKMKDPNFKSRASANFDVSKGEFDNMRHFDNA 459
Query: 307 SKLTEQMIFQLDEQ 348
SK T Q I QL EQ
Sbjct: 460 SKATRQEIQQLAEQ 473
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +1
Query: 127 LIDPEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVELIASDVLDHYRTFALLERLLTVP 306
L PE Y LW++ + V T Q AK + + AS D + R
Sbjct: 400 LKSPEEYNLWVKESDFTHKVVTQQQEWKAKMKDPNFKSRASANFDVSKGEFDNMRHFDNA 459
Query: 307 SKLTEQMIFQLDEQ 348
SK T Q I QL EQ
Sbjct: 460 SKATRQEIQQLAEQ 473
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,282
Number of Sequences: 27780
Number of extensions: 295917
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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