Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e15
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    30   1.4  
Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
            family protein 4 protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +1

Query: 166  FLLTTSLLVDNIRIGIKPRAFEK*RDVDVENTGAIILIDAVMTARILDLGVCCNYHRRDR 345
            FL+T SLL  +I +G+         D+D  + G I++  A+  A    + +C  YHR + 
Sbjct: 812  FLMTFSLL--SISMGVCGGLALLGSDLDSVSMGCIVM--AIGLAVDYSVHICYRYHRSEY 867

Query: 346  AVCRKSMTPTPQDVSW 393
               ++ +  T   V W
Sbjct: 868  KTAQEKVADTLASVGW 883


>Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical
           protein F02D8.1 protein.
          Length = 175

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 482 CD*TVPVKWSLISRSHEYNYVLNNGSTELCQETSC 378
           C     +K  +  RSHE    L N +T  CQ+TSC
Sbjct: 114 CSLKTQIKDKMTGRSHEN---LANRATHYCQKTSC 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,658
Number of Sequences: 27780
Number of extensions: 256618
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)