Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27e14
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 29 1.3
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 28 2.9
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 28 3.9
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 6.8
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 27 6.8
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026... 27 9.0
02_02_0736 - 13518432-13518473,13518742-13518795,13518929-135189... 27 9.0
01_07_0225 - 42126650-42127020,42127057-42127150,42127229-421275... 27 9.0
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 241 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSFLSTTYTSPVKR 95
+KS +SD+LS S +K+ G + + TC TKK+ SF T PV R
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF--NTAKRPVGR 318
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 240 LNREGISTQTNFRNHLLLKDMQ 175
+NREGIS N N LLLK +Q
Sbjct: 77 INREGISYYNNLINELLLKGVQ 98
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 141 KLFRSYQQHTRRPSNGPAANSAGTRAGW 58
+L +Q+ P GPA NS+G AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 39 ETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHV 158
ETI HPN +++ +PPV G + F+ HV
Sbjct: 1030 ETIPAHPNFMLFATQNPPVLYGGRKILSRAFRNRFIEVHV 1069
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 238 KSRRDFNSDELS*SPLIKRYAGTVFENTCLTKKTFSFLSTTYTSPVKRTGGELCRYTSR 62
K+RR F DE + P +RY GT++ T + + +T +P G C + R
Sbjct: 346 KARRLFQDDEKAAPPSAERYVGTLY--TKVGDEVLHKYTTPTATPSTTKGDCFCNWGVR 402
>04_03_0463 -
16200690-16200986,16202010-16202258,16202562-16202697,
16203150-16203368,16204137-16204515,16205010-16205253
Length = 507
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 114 YVVDKNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQ 254
YVV E L + +F+ + +L+ Y+S + ++ R LN +Q
Sbjct: 234 YVVFYEEDSALARMIFTKIIAFIILMDDTYDSYATIQECRKLNEAIQ 280
>02_02_0736 -
13518432-13518473,13518742-13518795,13518929-13518980,
13519907-13520000,13520601-13520811
Length = 150
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 238 KSRRDFNSDELS*SPLIKRYAGTVF 164
K RR F DE + P +RY GT+F
Sbjct: 8 KERRLFQDDENAAPPSAERYVGTLF 32
>01_07_0225 -
42126650-42127020,42127057-42127150,42127229-42127523,
42127604-42127809,42127898-42127945,42128078-42128296
Length = 410
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 29 WRHGNYRLSSQPARVPAEFAAGPFD 103
W H NYRL +PA A+ A P D
Sbjct: 206 WLHRNYRLVLRPAWTLADIADDPED 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,163
Number of Sequences: 37544
Number of extensions: 191986
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -