Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e14
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical...    27   4.6  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical
           protein Y116F11B.9a protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 157 TCLTKKTFSFLSTTYTSPVKRTGGELCRYTSRLG 56
           +CLTKK F+++        +  G ++C++  R G
Sbjct: 443 SCLTKKYFNYVKLEKYGKTQCPGPQMCKFQKRWG 476


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 394 DHFGCSSNYCFNNY 435
           D+F C  N CFNNY
Sbjct: 162 DNFHCMINQCFNNY 175


>Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical
           protein F28B1.9 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 166 FENTCLTKKTFSFLSTTYTSPVKRTGG 86
           F+ TC+      FL TT T+PV    G
Sbjct: 183 FKGTCMQNTEIPFLHTTNTNPVNSGAG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,789
Number of Sequences: 27780
Number of extensions: 183878
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)