Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e11
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.42 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.73 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 141 SGLFYNL*NVCRQQIRIFD*STTFICNQL 55
           SGL  N+ +VC  Q+ +FD +T+ +  Q+
Sbjct: 138 SGLINNVRSVCPPQLLVFDLNTSQLLKQV 166



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 175 YEYIKKLFLRTKYMDDSIDYKDFNRRILL 261
           YEY+  +  R + +    D+ D N RIL+
Sbjct: 373 YEYVLAVSNRIQKVIYGFDFNDVNFRILI 401



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +1

Query: 457 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKXPTLKSLP 588
           FG +   +  I++ +Y+YT    +  D+  +  F+       +P
Sbjct: 42  FGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDKTFVIIMKFNGVP 85


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 457 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKXPTLKSLP 588
           FG +   +  +++ EY +T      +D+     F+  P  K +P
Sbjct: 48  FGSDERRQAAMQSGEYDHTKNYPFDVDQWRGMTFVTVPRYKGVP 91


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 457 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFI 561
           FG +   +  I++ EY+Y N   I +D+ +   F+
Sbjct: 45  FGSDEKRQAAIQSGEYNYKNNVPIDVDRWNGKTFV 79


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 265 VFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDN 426
           +FK  +      F +   I  VA  ++ + NPD K     +L +YN  +  + N
Sbjct: 1   MFKMQILTLGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMN 54


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 319 IIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDN 426
           II +   R+   NPD K     +L +YN  +  + N
Sbjct: 6   IILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSN 41


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 457 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFI 561
           FG +   +  I++ EY YT      +D+     F+
Sbjct: 48  FGSDEKRQAAIQSGEYDYTKNYPFDVDQWHNKTFL 82


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 457 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFI 561
           FG E   +  I++ EY +T      +D+  +  F+
Sbjct: 45  FGSEERRQAAIQSGEYDHTKNYPFDVDQWRDKTFV 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,590
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)