Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e04
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.30 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    29   1.6  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z92812-5|CAB07279.1|  326|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    27   6.5  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    27   8.6  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   8.6  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   8.6  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   8.6  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 104 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 223
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +2

Query: 77  CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 250
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 251 AMCC-NGDCLAVVVLDRNQLQNT 316
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 347 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 246
           CILNF  LP    A     T   PN+ HC+  +L
Sbjct: 3   CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 77  ILCVTPHSSHSIKTIMLN--FWQILL 6
           ILC TP S  S+K  M N  FW +LL
Sbjct: 39  ILCKTPDSMKSVKWSMFNLHFWSVLL 64


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +2

Query: 164 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 331
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 332 -ESLEYTSDNVELLCKKVCVIV 394
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +2

Query: 164 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 331
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 332 -ESLEYTSDNVELLCKKVCVIV 394
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 43  IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 135
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 250  TFNYTVIFQICIINVFHVPLF 188
            TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196


>Z92812-5|CAB07279.1|  326|Caenorhabditis elegans Hypothetical
           protein T03E6.5 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 77  ILCVTPHSSHSIKTIMLN--FWQILL 6
           ILC TP +  S+K  MLN  FW + L
Sbjct: 29  ILCKTPITMKSVKWSMLNLHFWSVFL 54


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 220 CIINVFHVPLFERVRNKQYISRQMH 146
           CI N+  +P+F+  R K  IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 247 FNYTVIFQICIINVFHVPLF-ERVRNKQYISRQMHNVKN 134
           FN+  +  IC +     P F ER RNKQYI  +M+ V N
Sbjct: 359 FNHYKVKSICDV----WPDFNERERNKQYIKTEMNQVPN 393


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 308  QNTDMEVLESLEYTSDNVELLCKKVCVIVD 397
            +N  M   + L+ +  ++ L C KVCVI D
Sbjct: 1003 ENASMSGRQPLDTSRKHMFLFCNKVCVITD 1032


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 77  ILCVTPHSSHSIKTIMLNF--WQILL 6
           I+C TP+   SIK ++LN   W ILL
Sbjct: 37  IICKTPNHMRSIKWLLLNLHTWCILL 62


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 344 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 246
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 66  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 344 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 246
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 83  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 344 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 246
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,355
Number of Sequences: 27780
Number of extensions: 259137
Number of successful extensions: 753
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)