Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27e02
         (606 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    143   5e-36
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    26   1.1  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.4  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.4  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   7.7  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  143 bits (346), Expect = 5e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +1

Query: 43  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 222
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 223 IQKESTLHLV 252
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  143 bits (346), Expect = 5e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +1

Query: 43  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 222
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 223 IQKESTLHLV 252
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  143 bits (346), Expect = 5e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +1

Query: 43  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 222
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 223 IQKESTLHLV 252
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 33  ESEDANFRKDPHGQDHH 83
           ESE  N RK PH QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 543 ASVSYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSG 424
           +S+  +L  T + V+ F DH+A+T+   +    +R  ++G
Sbjct: 207 SSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNG 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,674
Number of Sequences: 2352
Number of extensions: 12845
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58870980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)