Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d23
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    65   2e-12
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   2.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   3.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   4.2  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   5.5  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   7.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    23   9.6  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    23   9.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    23   9.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    23   9.6  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 65.3 bits (152), Expect = 2e-12
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +3

Query: 105 VRNYADA-PKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGV 281
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  GIL  HVP +  L+PGV
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGV 77

Query: 282 VTILENDGKQNKIFVSSG 335
           +++ +    ++K F+S G
Sbjct: 78  ISVTDESSNKSKYFISGG 95


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 183 KQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 305
           + V+ +++VP  +    I P  VP L  L       LE DG
Sbjct: 427 ESVLPEVNVPPITTFSIIRPSRVPALRFLAAPATRTLERDG 467


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 115 MQMLPKVTKWH*PSLRVIRSFMTNKLSNK 201
           +Q  P + +W   +LR +  F+TNKL NK
Sbjct: 336 LQPCPSLAEWD--ALRKVWLFITNKLLNK 362


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 186 VCHKRPYYPQRRSMPFRHLWEHLHSYVLEADEL 88
           +C K  ++PQ RS  F+ L+ +L  + ++  +L
Sbjct: 515 LCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQL 547


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 201 FV*QLVCHKRPYYPQRRSMPF 139
           F  Q      PYYP+R S PF
Sbjct: 330 FTDQFSSTMHPYYPKRTSTPF 350


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 273 PGVVTILENDGKQNKIFVS 329
           PG+  I EN GKQ   FVS
Sbjct: 334 PGLFAIAENYGKQILFFVS 352


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 335 ARRYEDFILFPIIF 294
           ++RY  FIL PIIF
Sbjct: 482 SKRYPTFILLPIIF 495


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 DEMALTFAAGNKVFYDKQVVKQIDVPSF 218
           DE+A     GN+V+   Q++K +  P F
Sbjct: 169 DEVAKENIGGNQVYLIHQLLKLVRAPKF 196


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 201 IDVPSFSGAFGILPKHVPTLAVLRPGVVT 287
           +D PS SG F  LPK    +   R   ++
Sbjct: 620 VDSPSLSGGFFALPKQTEAIFHARTSFIS 648


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 101  KPTSYISDYTTECQ 60
            K T YISDY TE Q
Sbjct: 996  KLTKYISDYKTEIQ 1009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,504
Number of Sequences: 5004
Number of extensions: 25269
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)