Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27d23
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0467 - 18479199-18479543,18481145-18481417 46 8e-06
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 29 0.70
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516... 28 2.1
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 27 2.8
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 27 3.8
03_01_0283 + 2193632-2195182 27 5.0
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 26 6.6
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 26 6.6
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 26 8.7
09_01_0133 - 1998528-1998566,1998672-1998710,1998796-1998946,199... 26 8.7
06_01_0036 + 364316-365758 26 8.7
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 26 8.7
>07_03_0467 - 18479199-18479543,18481145-18481417
Length = 205
Score = 46.0 bits (104), Expect = 8e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +3
Query: 99 LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 278
+Q R A ++ + F K + V + VP+ +G G+LP HV T+A L+PG
Sbjct: 61 MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120
Query: 279 VVTILENDGKQNKIFVSSG 335
V+++ E + K FVSSG
Sbjct: 121 VLSVHEGN-DITKYFVSSG 138
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.5 bits (63), Expect = 0.70
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 243 KHVPTLAVLRPGVVTILENDGKQNKIF 323
KH P + R G +++ E DGK+NK++
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259
>11_05_0074 +
18850567-18851095,18851249-18851274,18851353-18851645,
18851898-18852699,18852874-18853022,18853105-18853393,
18853479-18853517,18853623-18853661
Length = 721
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 323
++ Q D F G + KH P +A L P VVTI L+N+ G N I+
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNYIY 581
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 197 FDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQ 60
FD + + R E C +TFG I KP +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 171 PYYPQRRSMPFRHLWEHLHSYV 106
P+ P+ + +P HLW H+ +V
Sbjct: 308 PFGPRDKYIPKEHLWPHIQEFV 329
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 93 RRLQVRNYADAPKGDEMALTF-AAGNKVF 176
R + N+A+ PKGDE A F GN +F
Sbjct: 89 RHIFTSNFANYPKGDEYAEIFDVLGNGIF 117
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 203 NLFDNLFVIKDLITRSEGQCHFV 135
N+ DNL + K ++T S G+C +
Sbjct: 352 NIMDNLNISKAMVTMSSGRCGII 374
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 323
++++ D F G + KH P +A L P VVT+ L+ND G N I+
Sbjct: 243 ILREHDGKPFLGPTNYI-KHAPEVAFLDPQVVTVTNLQNDRQGMVNYIY 290
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 203 NLFDNLFVIKDLITRSEGQCHFV 135
N+ DNL + K ++T S G+C +
Sbjct: 352 NIVDNLNISKAMVTMSSGRCGII 374
>09_01_0133 -
1998528-1998566,1998672-1998710,1998796-1998946,
1999185-1999337,1999416-2000302,2000390-2000836,
2000915-2001190,2001215-2001622
Length = 799
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +3
Query: 243 KHVPTLAVLRPGVVTI--LEND--GKQNKIF 323
KH P +A L P VVT+ L+ND G N I+
Sbjct: 681 KHAPEVAFLHPQVVTVTNLQNDRQGMVNYIY 711
>06_01_0036 + 364316-365758
Length = 480
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 219 SGAFGILPKHVPTLAVLRPGVVTILEN 299
SGAF P H+ + LRP VV +++
Sbjct: 337 SGAFSPAPAHLRVVKELRPAVVVCVDH 363
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 94 VGFKYVTMQMLPKVTKWH*PSLRVIRSFMT 183
+ +KY+TM + +W PS+R + +F T
Sbjct: 166 LAYKYITMGIPQWFPRWAQPSMRYVVTFTT 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,409,564
Number of Sequences: 37544
Number of extensions: 154844
Number of successful extensions: 345
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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