Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d23
         (338 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like precu...    24   1.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   4.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    22   7.3  

>AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like
           precursor protein.
          Length = 267

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 24  NLNKKRKIIRMALAFRGVIRNVARR 98
           N   K  +I+++ AFRG++   AR+
Sbjct: 168 NGTNKDTVIKLSNAFRGIVEKYARK 192


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 206 INLFDNLFVIKDLITRSEGQCHFVTF 129
           I++F+N F   + I+  E  C F +F
Sbjct: 361 ISMFNNSFHCSNFISLDEAVCSFSSF 386


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +3

Query: 27  LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 206
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 36  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 92

Query: 207 VPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 305
            P   G  G+   HVP+  + RP +V     DG
Sbjct: 93  -PKEYG--GVQMLHVPSDHIWRPDIVLYNNADG 122


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,111
Number of Sequences: 2352
Number of extensions: 6569
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 24206952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)