Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d23
         (338 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071203-1|AAL48825.1|  157|Drosophila melanogaster RE24457p pro...   112   1e-25
AE014298-1419|AAF46561.1|  157|Drosophila melanogaster CG2968-PA...   112   1e-25
AY052109-1|AAK93533.1|  550|Drosophila melanogaster SD05564p pro...    28   3.6  
AF495536-1|AAM18058.1|  550|Drosophila melanogaster prolyl 4-hyd...    28   3.6  
AE014297-4605|AAF57053.2|  550|Drosophila melanogaster CG31022-P...    28   3.6  
M81796-1|AAA28736.1|  974|Drosophila melanogaster optomotor-blin...    27   8.2  
AY118343-1|AAM48372.1|  488|Drosophila melanogaster LD46760p pro...    27   8.2  
AE014298-1175|AAF46371.2|  488|Drosophila melanogaster CG1440-PA...    27   8.2  
AE014298-631|AAF45946.2|  972|Drosophila melanogaster CG3578-PA ...    27   8.2  
AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,...    27   8.2  

>AY071203-1|AAL48825.1|  157|Drosophila melanogaster RE24457p
           protein.
          Length = 157

 Score =  112 bits (270), Expect = 1e-25
 Identities = 57/83 (68%), Positives = 65/83 (78%)
 Frame = +3

Query: 90  ARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVL 269
           AR  Q R+Y+D     EM LTFAA NK FYD  VV+QIDVPSFSG+FGIL KHVPTLAVL
Sbjct: 15  ARLAQNRSYSD-----EMKLTFAAANKTFYDAAVVRQIDVPSFSGSFGILAKHVPTLAVL 69

Query: 270 RPGVVTILENDGKQNKIFVSSGT 338
           +PGVV ++ENDGK  K FVSSG+
Sbjct: 70  KPGVVQVVENDGKTLKFFVSSGS 92


>AE014298-1419|AAF46561.1|  157|Drosophila melanogaster CG2968-PA
           protein.
          Length = 157

 Score =  112 bits (270), Expect = 1e-25
 Identities = 57/83 (68%), Positives = 65/83 (78%)
 Frame = +3

Query: 90  ARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVL 269
           AR  Q R+Y+D     EM LTFAA NK FYD  VV+QIDVPSFSG+FGIL KHVPTLAVL
Sbjct: 15  ARLAQNRSYSD-----EMKLTFAAANKTFYDAAVVRQIDVPSFSGSFGILAKHVPTLAVL 69

Query: 270 RPGVVTILENDGKQNKIFVSSGT 338
           +PGVV ++ENDGK  K FVSSG+
Sbjct: 70  KPGVVQVVENDGKTLKFFVSSGS 92


>AY052109-1|AAK93533.1|  550|Drosophila melanogaster SD05564p
           protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 156 AAGNKVFYDKQVVKQIDVPSFSGAFGI--LPKHVPTLAVLRPGVVTILE 296
           A GNK FY+K++ +Q+ +    G  G   +PK    +A   P +  + E
Sbjct: 250 ANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTE 298


>AF495536-1|AAM18058.1|  550|Drosophila melanogaster prolyl
           4-hydroxylase alpha-relatedprotein PH4[alpha]EFB
           protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 156 AAGNKVFYDKQVVKQIDVPSFSGAFGI--LPKHVPTLAVLRPGVVTILE 296
           A GNK FY+K++ +Q+ +    G  G   +PK    +A   P +  + E
Sbjct: 250 ANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTE 298


>AE014297-4605|AAF57053.2|  550|Drosophila melanogaster CG31022-PA
           protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 156 AAGNKVFYDKQVVKQIDVPSFSGAFGI--LPKHVPTLAVLRPGVVTILE 296
           A GNK FY+K++ +Q+ +    G  G   +PK    +A   P +  + E
Sbjct: 250 ANGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTE 298


>M81796-1|AAA28736.1|  974|Drosophila melanogaster optomotor-blind
            protein.
          Length = 974

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 231  QKHH*MMVHQFV*QLVCHKRPYYPQRRSMPFRHLWEHLHSY 109
            Q HH    H    Q   H +  + Q+ + P  H   HLHS+
Sbjct: 924  QHHHHTQAHHQQQQHQSHHQQQHHQQPAQPHPHHQTHLHSH 964


>AY118343-1|AAM48372.1|  488|Drosophila melanogaster LD46760p
           protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 143 HFVTFGSICIVTYLKPT-SYISDYTTEC 63
           HF     +C+VT  +PT SY   YT +C
Sbjct: 295 HFNVEDKVCLVTDPRPTSSYDQAYTVDC 322


>AE014298-1175|AAF46371.2|  488|Drosophila melanogaster CG1440-PA
           protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 143 HFVTFGSICIVTYLKPT-SYISDYTTEC 63
           HF     +C+VT  +PT SY   YT +C
Sbjct: 295 HFNVEDKVCLVTDPRPTSSYDQAYTVDC 322


>AE014298-631|AAF45946.2|  972|Drosophila melanogaster CG3578-PA
            protein.
          Length = 972

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 231  QKHH*MMVHQFV*QLVCHKRPYYPQRRSMPFRHLWEHLHSY 109
            Q HH    H    Q   H +  + Q+ + P  H   HLHS+
Sbjct: 922  QHHHHTQAHHQQQQHQSHHQQQHHQQPAQPHPHHQTHLHSH 962


>AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,
           isoform B protein.
          Length = 3400

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 210 PSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFV 326
           PSF+  + +LP+ + +L VL+   + ++  +  Q +I+V
Sbjct: 136 PSFNSEYNLLPRGILSLKVLQELPIIVVLINSPQKEIYV 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,897
Number of Sequences: 53049
Number of extensions: 287209
Number of successful extensions: 534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)