Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d23
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    79   8e-16
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   0.21 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   0.21 
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   0.85 
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    28   2.0  
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    28   2.0  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    28   2.0  
AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical...    27   2.6  
AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical...    27   2.6  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical p...    27   4.5  
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p...    27   4.5  
Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.    27   4.5  
AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.    27   4.5  
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 79.0 bits (186), Expect = 8e-16
 Identities = 33/68 (48%), Positives = 49/68 (72%)
 Frame = +3

Query: 135 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQN 314
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT+ VL+PGVV++  N+G   
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88

Query: 315 KIFVSSGT 338
           ++FVSSGT
Sbjct: 89  RLFVSSGT 96


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 123 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 218
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 123 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 218
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 332 RRYEDFILFPIIFKNCNNTRSKNSQ 258
           RR++  +  P+++ N NN  SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 177 YDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNK 317
           Y K   +Q+ VP  +   G+LP+ +  L   R  V ++++++  + K
Sbjct: 859 YSKDSDEQLSVPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAK 905


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 165 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 58
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 57  YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 165 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 58
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145


>AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.13 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 95  TSYISDYTTECQCHSDYLSFL 33
           T +   YT +CQC+S  L FL
Sbjct: 100 TDFCKKYTNDCQCYSMRLGFL 120


>AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.25 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 95  TSYISDYTTECQCHSDYLSFL 33
           T +   YT +CQC+S  L FL
Sbjct: 170 TDFCKKYTNDCQCYSMRLGFL 190


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 149 QCHFVTFGSICIVTYLKPTSYISDYTTECQCHSDYLSFLIQIIT 18
           QC F  +G  C  T    TSY+  +       SDY  +   I T
Sbjct: 163 QCPFDYYGDKCQTTRSVQTSYVGCFDDSSASFSDYYVYSTTITT 206


>Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.
          Length = 280

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 284
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 234 ILPKHVPTLAVLRPGVVTILENDGKQNK 317
           IL    P +  +RP   TIL ND K +K
Sbjct: 908 ILSSQTPLIGTVRPCKYTILVNDAKWSK 935


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,593,431
Number of Sequences: 27780
Number of extensions: 149350
Number of successful extensions: 324
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)