Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d23
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 23/104 (22%), Positives = 45/104 (43%)
 Frame = +3

Query: 27  LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 206
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 37  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 93

Query: 207 VPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGT 338
            P   G  G+   HVP+  + RP +V     DG      ++  T
Sbjct: 94  -PKEYG--GVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKAT 134


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 209 YINLFDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTE 66
           Y N F +  VI++       +   V  G   I TY+  T+Y S Y  E
Sbjct: 166 YPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMRE 213


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +3

Query: 27  LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 206
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 37  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 93

Query: 207 VPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 305
            P   G  G+   HVP+  + RP +V     DG
Sbjct: 94  -PKEYG--GVKMLHVPSDHIWRPDIVLYNNADG 123


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 213 SFSGAFGILPKHVPT 257
           ++SG+   LPKH+PT
Sbjct: 371 TYSGSPTELPKHLPT 385


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 109 VTMQMLPKVTKW-H*PSLRVIRSFMT 183
           VTMQ+LPK+ ++    S+  + S+MT
Sbjct: 71  VTMQLLPKLMEFDDWTSVMELHSWMT 96


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 231 GILPKHVPTLAVLRPGVVTILENDG 305
           G+   HVP+  + RP +V     DG
Sbjct: 95  GVEMLHVPSDHIWRPDIVLYNNADG 119


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +1

Query: 55  WHWHSV 72
           WHWH V
Sbjct: 210 WHWHLV 215


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 302  IIFKNCNNTRSKNSQGRYVF 243
            I+  N   T SKN QGR  F
Sbjct: 963  IVNSNLRLTFSKNVQGRVGF 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,227
Number of Sequences: 438
Number of extensions: 1670
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)