Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d21
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   205   1e-53
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  205 bits (501), Expect = 1e-53
 Identities = 91/151 (60%), Positives = 117/151 (77%)
 Frame = +2

Query: 32  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 211
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 212 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 391
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 392 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 484
           H LY++AKGN FKNK+ L+EYI +KK E  R
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKR 151


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 128  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 262
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 140 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 253
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 247 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 110
           ++T FC+FAD S   +  R  DD+  ++   +  SG  + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  RLAASVMRCGKKKVWLDPNEI 118
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical
           protein C04F6.2 protein.
          Length = 87

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 246 FLRASVFLRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 100
           F   +VFL  + +      +L  +P+L+    F ++L   I L+ FG N
Sbjct: 32  FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFGVN 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,093
Number of Sequences: 27780
Number of extensions: 256521
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)