Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d20
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.18 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   0.96 
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   0.96 
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   2.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   2.9  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   9.0  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 143 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 30
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 124 SHMTRFTNDSNELVYSLWMFMIGQ 53
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 6   GMNNEYXISLAKKGGGCPIMNIHS 77
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 18  EYXISLAKKG-GGCPIMNIHSEYTNSFESFVNRVIWENFYK 137
           +Y + + ++  GG P+  + SE  + F    ++ I+E +YK
Sbjct: 388 DYLLRVGEQASGGKPLKEVFSEILDLFRYIASKDIFEAYYK 428


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 293 LINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFGRVCADVNDGF 135
           L N+L+            + R  C LL+F+    L  ++ F   VC  +  GF
Sbjct: 623 LNNILVASLKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCPHIEHGF 675


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 233 RVWCKLLYFENERNLN*DFL 174
           R W +L  FEN RNL   FL
Sbjct: 515 REWRQLFKFENYRNLKNKFL 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,385
Number of Sequences: 5004
Number of extensions: 23914
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)