Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27d20
(374 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 29 4.9
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 29 4.9
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 29 4.9
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 29 4.9
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 29 4.9
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 29 4.9
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2739 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2788
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta protein.
Length = 3052
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 173 FFGRV-CADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVV 12
F GR+ C +V D V + LER L D W A ++ T+S+FV+
Sbjct: 2661 FSGRMPCIEVGDSIVH-----KARETLERAIKLVNDTKKWGARVVYGDTDSMFVL 2710
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,425,547
Number of Sequences: 237096
Number of extensions: 805218
Number of successful extensions: 1132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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