Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d20
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    29   0.82 
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    27   3.3  
AF025457-9|AAB70969.2|  393|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 91  ELVYSLWMFMIGQPPPFLARLIXYSLFMP 5
           E +  +W F+ G PPPF   ++    F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 338 RTTMVCKSTTHRI*RLINVLITMYSVLIRRTSEQRRVWCKLLYFENE 198
           RTT +  +           + T+Y++ ++  S +R +W   ++FE E
Sbjct: 566 RTTWLADAENFEKEEAFTCVRTVYAIALKEFSRKRSIWDAAIHFERE 612


>AF025457-9|AAB70969.2|  393|Caenorhabditis elegans Hypothetical
           protein C08E3.10 protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 12  NNEYXISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTD 161
           N+ + I+   KGGGC ++   S Y N  + F+      +  K I   G D
Sbjct: 133 NDRFIITYEPKGGGCTVIYFDS-YVNEDDYFLEEYDERSNKKEIFVPGKD 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,686,740
Number of Sequences: 27780
Number of extensions: 134209
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)