Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27d18
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 138 4e-34
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 136 2e-33
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 134 6e-33
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 125 5e-30
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 124 9e-30
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 123 2e-29
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 74 1e-14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 73 4e-14
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 67 2e-12
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 3e-12
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 64 1e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 64 1e-11
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 63 2e-11
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 63 3e-11
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 61 1e-10
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 56 3e-09
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 54 2e-08
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 46 3e-06
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 33 0.022
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 33 0.039
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.83
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 28 1.1
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 27 1.5
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 27 1.5
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 1.9
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 4.4
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 5.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 5.9
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 7.7
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 25 7.7
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 138 bits (335), Expect = 4e-34
Identities = 61/97 (62%), Positives = 74/97 (76%)
Frame = +2
Query: 278 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTAGQED 457
+K VVGDG VGKTCLL YT N+FP +YVPTVFDNY + + E + L+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQED 63
Query: 458 YERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
Y+RLRPLSY QT+ FLVC+SV S +S+ENV KW+PE
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE 100
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 136 bits (329), Expect = 2e-33
Identities = 59/103 (57%), Positives = 74/103 (71%)
Frame = +2
Query: 260 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWD 439
M T R K+ +VGDG GKTCLL V+++ FPE YVPTVF+NYV + VDG V +ALWD
Sbjct: 1 MATELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWD 60
Query: 440 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
TAGQEDY+RLRPLSY ++ L+C++V S S +NV KW E
Sbjct: 61 TAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISE 103
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 134 bits (325), Expect = 6e-33
Identities = 58/103 (56%), Positives = 74/103 (71%)
Frame = +2
Query: 260 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWD 439
M T R K+ +VGDG GKTCLL V+++ FPE YVPTVF+NYV + VDG + +ALWD
Sbjct: 1 MTTELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWD 60
Query: 440 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
TAGQEDY+RLRPLSY ++ L+C+SV + S +NV KW E
Sbjct: 61 TAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISE 103
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 125 bits (301), Expect = 5e-30
Identities = 55/98 (56%), Positives = 71/98 (72%), Gaps = 2/98 (2%)
Frame = +2
Query: 281 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITV--DGEDVXMALWDTAGQE 454
K+ VVGDG GKTCLL V++ FPE YVPTVF+NY+ IT + + + +ALWDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 455 DYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
+Y+RLRPLSY +N L+C+S+ +S NV KWYPE
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE 113
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 124 bits (299), Expect = 9e-30
Identities = 51/96 (53%), Positives = 71/96 (73%)
Frame = +2
Query: 281 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTAGQEDY 460
KI ++GDG GKT LL V+T+ FP+ Y PT+F+NY+ I VDG + ++LWDTAGQE+Y
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 461 ERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
++LR LSY+ T+ ++C++V SR S ENV KW PE
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE 110
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 123 bits (297), Expect = 2e-29
Identities = 57/98 (58%), Positives = 69/98 (70%)
Frame = +2
Query: 275 RLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTAGQE 454
R K+ VVGDG GKT LL V+T FP EYVPTVF+NYV VDG+ V +ALWDTAGQE
Sbjct: 8 RRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQE 67
Query: 455 DYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
+YERLRP+SY + + LV +++ S S ENV KW E
Sbjct: 68 EYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE 105
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 74.1 bits (174), Expect = 1e-14
Identities = 35/92 (38%), Positives = 54/92 (58%)
Frame = +2
Query: 272 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTAGQ 451
+ K+ VVGDG VGK+ L ++ F +EY PT+ D+Y +DGE + + DTAGQ
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQ 66
Query: 452 EDYERLRPLSYTQTNCFLVCYSVGSRSSYENV 547
E+Y +R FL+ Y++ SRSS++ +
Sbjct: 67 EEYSAMREQYMRTGEGFLLVYNITSRSSFDEI 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 72.5 bits (170), Expect = 4e-14
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Frame = +2
Query: 260 MGTTKR--LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVDGEDVXMA 430
M KR LK+ ++GD VGKTCL+ + +F EY T+ +++ + VD + V +
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 431 LWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
LWDTAGQE ++ L Y +C ++ Y+V + S+++V W E
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQE 105
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 66.9 bits (156), Expect = 2e-12
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 281 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGHITVDGEDVXMALWDTAGQED 457
K+ +VGDG GKT + + EF ++Y+ T+ + + H + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 458 YERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKW 559
LR Y Q C ++ + V SR +Y+NV H W
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWW 104
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 278 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGHITVDGEDVXMALWDTAGQE 454
+K+ ++GD VGK+CLL ++ + F ++ T+ D + I +DG+ + + +WDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 455 DYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWY 562
+ + Y L+ Y V + S++NV W+
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNV-RTWF 104
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +2
Query: 278 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVG-HITVDGEDVXMALWDTAGQE 454
LK+ ++G+ VGKT ++ Y +F ++Y T+ +++ + VD + V + LWDTAGQE
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 455 DYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
++ L Y +C ++ Y V + S+E + W E
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDE 105
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 64.1 bits (149), Expect = 1e-11
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 281 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTV-FDNYVGHITVDGEDVXMALWDTAGQED 457
K+ ++GD VGK+CLL + + + E Y+ T+ D + ++G+ V + +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 458 YERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
+ + Y + ++ Y V + S+ NV +W E
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQE 105
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 63.3 bits (147), Expect = 2e-11
Identities = 32/96 (33%), Positives = 51/96 (53%)
Frame = +2
Query: 260 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWD 439
M K +I V+G VGK+ L Y N F E Y PT+ + + +I G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 440 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENV 547
TAGQ++Y L + +++ YS+ S+SS+E V
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMV 96
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 62.9 bits (146), Expect = 3e-11
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +2
Query: 281 KITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVG-HITVDGEDVXMALWDTAGQED 457
K ++GD VGK+ LL +TRNEF E T+ + +I +D + + +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 458 YERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
Y + Y L+ Y + +SS++NV +W E
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVG-RWLKE 107
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 60.9 bits (141), Expect = 1e-10
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +2
Query: 239 SDVAARTMGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVD-G 412
S+ A + + T + K+ ++GD VGK+ L+ + +++F + T+ ++ + +D
Sbjct: 3 SNTAPKNVVTINQ-KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 413 EDVXMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
V + +WDTAGQE Y+ L P+ Y NC +V Y + +S E W E
Sbjct: 62 TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKA-KSWIKE 112
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +2
Query: 278 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVDGEDVXMALWDTAGQE 454
+K+ ++GD +GKT L+ Y + F EE T+ N++ I++ ++ ++WD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 455 DYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWY 562
++ + P+ L + + SR S N +WY
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDL-SRKSTLNSIKEWY 105
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +2
Query: 272 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVDGEDVXMALWDTAG 448
++ K+ +G+ VGKT L+ + ++F Y T+ +++ + ++ V + LWDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 449 QEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKW 559
QE + L P ++ ++ Y + + +S+ N KW
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKW 105
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = +2
Query: 278 LKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDG-----EDVXMALWDT 442
+KI + G GK+CLL + +N++ ++ TV ++ I G + + + +WDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 443 AGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENV 547
AGQE + + Y ++ Y V ++ S+E +
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL 104
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 33.5 bits (73), Expect = 0.022
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 272 KRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTAGQ 451
+ ++I +VG GKT +LY E +PT+ N TV+ ++ +WD GQ
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYRNISFTVWDVGGQ 71
Query: 452 EDYERLRPL 478
+++RPL
Sbjct: 72 ---DKIRPL 77
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 32.7 bits (71), Expect = 0.039
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +2
Query: 266 TTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWDTA 445
+ K ++I ++G GKT +LY N+ +PTV N TV +++ +WD
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVE---TVTYKNIKFNVWDVG 73
Query: 446 GQEDYERLRPL 478
GQ +++RPL
Sbjct: 74 GQ---DKIRPL 81
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 0.83
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = -2
Query: 453 SCPAVSHNAIXTSSPSTVMWPT*-LSNTVGTYSSGNSFLVYTYSKQVLPTIPSPTTVIFN 277
S P S +++ SS S + + LS+++ T +S + TYS V+P+ + + +
Sbjct: 626 SSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSS--LSTYSSSVIPSSSTLVSSSSS 683
Query: 276 LFVVPMVRAATSDKPISPQNSRFKTLLYKHLKIIKQVPHMEGELYGFVRNSVLDCSYHGD 97
L V A++S PI P +S +L+ + + + H L +S + S +
Sbjct: 684 LIVSSSPVASSSSSPI-PSSS---SLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSS 739
Query: 96 IMILSN 79
+I ++
Sbjct: 740 TLITAS 745
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 176 IIFKCLYNRVLKR-----EFCGDIGLSDVAARTMGTTKRLKITVVGDGMVGKTCLLY 331
I+ K Y +L+R +FC D+GL MG ++ G+TC+++
Sbjct: 46 IVAKYTYTELLRRVNTIAKFCDDLGLGKTVGIHMGHELDFLCSIFALWATGRTCVIF 102
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 318 VLPTIPSPTTVIFNLFVVPMVRAATSDKPISPQNS 214
V P +P ++ L VV M + +T+D I P+N+
Sbjct: 113 VSPAVPITFAYLYALAVVSMFKCSTADPGILPRNA 147
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 342 LVYTYSKQVLPTIPSPTTVIFNLFVVPMVRAATSDKPISP 223
L + ++ VLPT T V++NL + ++ A PI+P
Sbjct: 206 LATSKARSVLPTSYGRTDVVYNLQRLALLTTALGQTPINP 245
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -2
Query: 309 TIPSPTTVIFNLFVVPMVRAATSDKPISPQNSRFKTLLYKHLKIIKQVPHMEGEL 145
T+ P TV+F+ +R ++ + PQ ++K+LKI K+ P EG+L
Sbjct: 491 TLKPPRTVVFDFLGKDSIRYY-NEVEVDPQ-------VFKNLKIFKRPPKKEGDL 537
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 27 ARIVLVLNRPAIANIPPSLIRSLYHRDKNNQGLSYGRNRIVHL 155
A ++ +N+P+ + I S + SL H KN+ + VHL
Sbjct: 383 ASLISNINQPSTSRIDTSFMLSLQHEIKNSHSEASDGTSDVHL 425
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 42 VLNRPAIANIPPSLIRSLYHRDKNN 116
V N ANI P L+RS + RDK N
Sbjct: 428 VTNSGKDANIIPCLLRSKHKRDKAN 452
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 291 TVIFNLFVVPMVRAATSDKPISPQNSRFKTLLYKH 187
T I N+F+ P+V+A T + ++ + +L KH
Sbjct: 1340 TSIVNVFITPLVKARTFPESLTTYHLDLLLVLSKH 1374
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -2
Query: 231 ISPQNSRFKTLLYKHLKIIKQVPHMEGELYGFVRNSVLDCSYHG 100
++P +R + +++++ ++YGF N + D SY G
Sbjct: 358 MAPSETRLVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKG 401
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 102 RDKNNQGLSYGRNRIVHLPYVAP 170
R+ N GL++G N+I L Y+ P
Sbjct: 38 REDCNSGLAFGGNKIRKLEYLIP 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,855
Number of Sequences: 5004
Number of extensions: 51597
Number of successful extensions: 168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -