Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d18
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...   149   6e-38
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    71   3e-14
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            54   3e-09
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   5.3  
EF588439-1|ABQ96675.1|  177|Anopheles gambiae transposase protein.     23   6.9  
CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence re...    23   6.9  

>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score =  149 bits (361), Expect = 6e-38
 Identities = 66/103 (64%), Positives = 77/103 (74%)
 Frame = +2

Query: 260 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVXMALWD 439
           M + + +K  VVGDG VGKTC+L  YT + FP EYVPT FDNY   + VDG  V + LWD
Sbjct: 1   MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWD 60

Query: 440 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
           TAGQEDY+RLRPLSY QT+ FL+CYSV S SS+ENV  KWYPE
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPE 103


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 70.9 bits (166), Expect = 3e-14
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +2

Query: 440 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVXHKWYPE 568
           +AGQEDY+RLRPLSY QT+ FLVC+SV S SS+ENV  KW PE
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 43


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 54.0 bits (124), Expect = 3e-09
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +2

Query: 275 RLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVDGEDVXMALWDTAGQ 451
           + K+ ++G+  VGK+ L+  + + +F E    T+   ++   + +D   V   +WDTAGQ
Sbjct: 24  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQ 83

Query: 452 EDYERLRPLSYTQTNCFLVCYSVGSRSSY 538
           E Y  L P+ Y      +V Y + +  S+
Sbjct: 84  ERYHSLAPMYYRGAQAAIVVYDIQNSDSF 112


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 286 NCCWRWYGWQDLLAICI 336
           +CCW W  +Q+ +A  +
Sbjct: 789 DCCWVWLKFQEWVAFIV 805


>EF588439-1|ABQ96675.1|  177|Anopheles gambiae transposase protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 302 GMVGKTCLLYVYTRNEFPEEYVPTVFDNYV 391
           G++ K CL +    +E  +++V T+  NY+
Sbjct: 114 GLICKECLPFNLVESEIFKKFVYTLNPNYI 143


>CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence
           receptor protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 278 LKITVVGDGMVGKTCLLYVY 337
           ++IT V +G+ G+T  LYV+
Sbjct: 186 VQITEVDEGLDGETFFLYVF 205


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,241
Number of Sequences: 2352
Number of extensions: 12351
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)