Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d18
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.70 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 159 MEGELYGFVRNSVLDCSYH 103
           ++G+L G V   ++DCS H
Sbjct: 312 LKGDLEGLVEGVIIDCSNH 330


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 267 VPMVRAATSDKPISPQNS 214
           +PM ++ TSD P S QNS
Sbjct: 220 LPMWKSDTSDGPESHQNS 237


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 322 AGLANHTISNNSYLQSL 272
           + L+N+TI NN+Y + L
Sbjct: 316 SSLSNNTIHNNNYNKKL 332


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 225 PQNSRFKTLLYKHLKIIKQVPHMEGELYGFVRNSVLDCSY 106
           PQ +RF +L Y   K +  +  +E  L   + +  L   Y
Sbjct: 310 PQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEY 349


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 225 PQNSRFKTLLYKHLKIIKQVPHMEGELYGFVRNSVLDCSY 106
           PQ +RF +L Y   K +  +  +E  L   + +  L   Y
Sbjct: 310 PQRNRFSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEY 349


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 315 RPACYMYTLEMNFLK 359
           RPA +  TLEM +L+
Sbjct: 387 RPATFQDTLEMKYLE 401


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = +3

Query: 405 WMERTXKWRYGIQLDKKIMNG*DHYHI 485
           W+     ++ G+ L+++  +   HYH+
Sbjct: 438 WLPVHTSYKSGLNLEQEKKDSISHYHL 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,351
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)