Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d17
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    33   0.043
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    28   1.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   1.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   1.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.8  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   3.7  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   3.7  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   5.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   6.5  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    25   6.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 436 TARLRTPSVQECRASPADFGFPTLEP*NVPKATLASFLAFNTETFTNTTIYLATF 600
           T  + T +++   AS    G PT  P N P  T  +     T T+T  T + +TF
Sbjct: 817 TTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTF 871


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 553 MLKNWPKLLLARFMVPKSENQNPQGLPCTLGPMVYVVLPLAGSN 422
           +LK  P  LLA+ ++ K E++N    P  + P +Y+++ +A S+
Sbjct: 549 LLKMVPMELLAKILLEKLESKN----PILIEPSIYILVHIAASD 588


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 469 TLGPMVYVVLPLAGSNTTIFLSGSGY 392
           T+   V VVLP AG+NT   +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 469 TLGPMVYVVLPLAGSNTTIFLSGSGY 392
           T+   V VVLP AG+NT   +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 45  ATKRKIGDSSSDDNQPKRERVES 113
           A+KRKI  SSSDD++ K E   S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 424 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 335
           NT ++ +G G ++ +H  +LFK   R   F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 454 VYVVLPLAGSNTTIFLSGSGYNLSS 380
           V VV+P AG  TT   SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 454 VYVVLPLAGSNTTIFLSGSGYNLSS 380
           V VV+P AG+ TT   SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 476 QALRILVFRLWNHKTCQKQLWP 541
           Q L IL+ +LWNHK  +  + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  LNARLAIRAATTTSQSGKEWK 111
           LNA L +RA    S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = +3

Query: 162 FNVKHDETGVMCYFTP--SSVQLE----PRELTKMLWQ-EQMAINVKRGNFSILNCSCFE 320
           F + H+   +  +F+   S +Q E     R L  +L   EQ++  V +  FS  N     
Sbjct: 354 FLINHEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIR 413

Query: 321 GRFLKNEFCRLANLNSLHEW 380
                 E+C+  ++NS  EW
Sbjct: 414 SEI--GEYCKTLDINSCREW 431


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 391  NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 290
            N   + C+   +   +NSFFKNL S    +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 175 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 20
           C +L   P+L +  +   +SP    +   +L+S +   I R+ A L  C  C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 227
           ++NN+    N+KH E G  +  Y TP   +LE
Sbjct: 61  FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 266 HLLLPQHLCQLAWLQLNGRRR 204
           H+++PQ   Q +W+  +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 496 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 329
           N +  G P +L  +     PLA S T+  L  S S  NL      LF+  + +N+  +F 
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262

Query: 328 NLPS 317
             P+
Sbjct: 263 RRPT 266


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 396  DTTCLPIRANYSN*PVDKIRFSKICLRNNYNSVLKSC 286
            DT  L    N+S   + ++ F++  LRN    +L  C
Sbjct: 1226 DTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDEC 1262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,286
Number of Sequences: 5004
Number of extensions: 59565
Number of successful extensions: 208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)