Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d17
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0346 + 28590238-28590349,28590678-28590796,28590890-28591312     30   1.2  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   2.2  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   2.9  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   3.8  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   5.0  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    27   8.8  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    27   8.8  

>01_06_0346 + 28590238-28590349,28590678-28590796,28590890-28591312
          Length = 217

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 483 CGFWFSDFGTIKRAKSNFGQFFSIQYGDIHKHNNIFGNILPK 608
           CGFW         +   FG   S  +G+I+  N+++  ILP+
Sbjct: 12  CGFWGLFGHDPNESFQKFGSIQSSPFGNIYGQNDVYTTILPR 53


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 1   ELDLNHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 132
           E+  +H R  +S +   +ARL  R A  TS SG+ W+ V  + W
Sbjct: 170 EIAPHHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
 Frame = +3

Query: 321 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 482
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP 
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401

Query: 483 ---CGFWFSDFGTIK-RAKSNFGQFFSI 554
              C   F ++ + K R  ++ G++  I
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPI 429


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 175 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 20
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 INVKRGNFSILNCSCFEGRFLKNEFC 347
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 12  EP-QQTAHVGSMATKRKIGDSSSDDNQ---PKRER 104
           EP ++T  V   A KR IGD  +DD +   PKR R
Sbjct: 63  EPSKKTRGVSQRAKKRSIGDDHADDTEQPPPKRSR 97


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 276 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEP 431
           ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P
Sbjct: 254 IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAP 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,949
Number of Sequences: 37544
Number of extensions: 392935
Number of successful extensions: 1312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)