Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d17
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   6.0  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    28   6.0  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    28   6.0  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    28   6.0  
Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical p...    27   7.9  

>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 51  KRKIGDSSSDDNQPKRERVESGEDQQ 128
           K K GDSSSDD+ P+R+R E   D +
Sbjct: 13  KFKRGDSSSDDSGPERDRDEDDSDNE 38


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 402 PDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFG 539
           PD+N+ V    N   T  IGP+++  P      D G  ++A+++ G
Sbjct: 25  PDQNVDVKVQENNVVTTKIGPKLETIPAAKMQDDNGDEEKAENSEG 70


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 400 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 272
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 400 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 272
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 400 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 272
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 122
           PQ+ A+        ++GD  ++ + PK+ R+E+G++
Sbjct: 99  PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134


>Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 122
           PQ+ A+        ++GD  ++ + PK+ R+E+G++
Sbjct: 99  PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134


>Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 122
           PQ+ A+        ++GD  ++ + PK+ R+E+G++
Sbjct: 99  PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134


>Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 122
           PQ+ A+        ++GD  ++ + PK+ R+E+G++
Sbjct: 99  PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,592
Number of Sequences: 27780
Number of extensions: 343335
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)