Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d14
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   2.4  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   3.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.6  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     23   9.6  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 161 CNIKKDFYTLVFVWNSLT*ACRYRATDKYFVTNLFRNTLDISD 289
           CN+ K+  T +F W  L  AC      K +  N F N+L ISD
Sbjct: 790 CNVLKEDITSIFSWEILGDACLSFCQLKNY-HNRFPNSL-ISD 830


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 7/17 (41%), Positives = 16/17 (94%)
 Frame = -2

Query: 163 TNLEADRRILYLKKKTT 113
           T+++AD++++++KK TT
Sbjct: 168 TDVDADKKVIHIKKTTT 184


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 124  FLNTKYAGRPLDL*YKEGF-LYFSFRLELA 210
            FLNT   G+PLD  Y   F +Y  ++++ A
Sbjct: 1125 FLNTVGRGQPLDYGYSIYFPMYIDWKMDEA 1154


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 218 ACRYRATDKYFVTNLFRNTLD 280
           A +YRA  K F+TN+  N L+
Sbjct: 282 ANKYRAFAKNFITNVVPNILE 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,750
Number of Sequences: 5004
Number of extensions: 15176
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)