Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d14
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0147 - 8895516-8895623,8895751-8895756,8895987-8896118,889...    25   8.3  

>05_03_0147 -
           8895516-8895623,8895751-8895756,8895987-8896118,
           8896499-8896600,8896822-8896858,8896950-8897242,
           8898293-8898418,8898590-8898726,8898818-8898889,
           8898972-8899020,8899242-8899312,8899395-8899505,
           8899602-8899929,8899999-8900172,8900519-8900578,
           8900622-8900861,8900986-8901048,8901123-8901125
          Length = 703

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 157 LEADRRILYLKKKTTYLTEFELNLFSYRKKYICIYI 50
           +   RR+L L +  TY    E+  F    + IC YI
Sbjct: 528 IHGPRRVLILARHATYPFVTEIRRFPITDEEICYYI 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,085,934
Number of Sequences: 37544
Number of extensions: 67077
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)