Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d14
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin c-t...    27   2.5  
Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    25   7.6  

>AC024774-2|AAM43790.1|  249|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 2 protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 94  LNLFSYRKKYICIYI 50
           LNLFS++++YIC+ I
Sbjct: 224 LNLFSFKQRYICLVI 238


>Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical
           protein K03D3.12 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 47  LNIYTYIFFPVTK*VKLKFSQVCCFFF*IQNTPVGL*ICNIKKDFYTLVFVW 202
           + IY+Y+F P+T  V +       FFF + N  +G  +  I + F  +V ++
Sbjct: 69  VRIYSYLFIPLTASVYMTSVSESGFFFKLLNFLIGCVLVIIVQAFDIVVLLF 120


>Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical
           protein F31E9.3 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 184 IKILLYITNLEADRRILYLKKKTTYLTEFELNLFSYRKKY 65
           +K+ L   N   +    Y+    TYL +F+  LF + K Y
Sbjct: 311 VKVFLPDYNSYPEGSAKYIADGITYLIDFDTKLFIFEKSY 350


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 169 YITNLEADRRILYLKKKTTYLTEF 98
           Y+T++  DR+ L++  ++T+  EF
Sbjct: 880 YLTDIVGDRKNLFINNESTWFEEF 903


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,172,033
Number of Sequences: 27780
Number of extensions: 80765
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)