Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27d12
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 382 e-107
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 1e-19
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 44 2e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 3e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.26
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 4.2
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 4.2
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 4.2
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 7.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 9.8
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 9.8
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 382 bits (939), Expect = e-107
Identities = 186/197 (94%), Positives = 195/197 (98%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 629
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 180
Query: 630 KIQDXEGIPPDXQRLIF 680
KIQD EGIPPD QRLIF
Sbjct: 181 KIQDKEGIPPDQQRLIF 197
Score = 382 bits (939), Expect = e-107
Identities = 186/197 (94%), Positives = 195/197 (98%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196
Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 629
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 256
Query: 630 KIQDXEGIPPDXQRLIF 680
KIQD EGIPPD QRLIF
Sbjct: 257 KIQDKEGIPPDQQRLIF 273
Score = 382 bits (939), Expect = e-107
Identities = 186/197 (94%), Positives = 195/197 (98%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272
Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 629
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 332
Query: 630 KIQDXEGIPPDXQRLIF 680
KIQD EGIPPD QRLIF
Sbjct: 333 KIQDKEGIPPDQQRLIF 349
Score = 301 bits (740), Expect = 6e-83
Identities = 146/153 (95%), Positives = 153/153 (100%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 348
Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 548
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
+ GK L DGRTLSDYN+ KESTL V GGM F K L GK
Sbjct: 44 IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 87
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
+ GK L DGRTLSDYN+ KESTL V GGM F K L GK
Sbjct: 120 IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 163
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
+ GK L DGRTLSDYN+ KESTL V GGM F K L GK
Sbjct: 196 IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 239
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
+ GK L DGRTLSDYN+ KESTL V GGM F K L GK
Sbjct: 272 IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 315
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXG 778
+ GK L DGRTLSDYN+ KESTL + + G
Sbjct: 348 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGG 380
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 270 IQKESTLHLVLRLRGG-MQIFVKTLTGK 350
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 498 IQKESTLHLVLRLRGG-MQIFVKTLTGK 578
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = +3
Query: 546 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLIF 680
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQD EGIPPD QRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXG 778
+ GK L DGRTLSDYN+ KESTL + + G
Sbjct: 44 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 270 IQKESTLHLVLRLRGG-MQIFVKTLTGK 350
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 498 IQKESTLHLVLRLRGG-MQIFVKTLTGK 578
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = +3
Query: 546 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLIF 680
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQD EGIPPD QRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXG 778
+ GK L DGRTLSDYN+ KESTL + + G
Sbjct: 44 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 270 IQKESTLHLVLRLRGG 317
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 498 IQKESTLHLVLRLRGG 545
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = +3
Query: 546 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLIF 680
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQD EGIPPD QRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGG 781
+ GK L DGRTLSDYN+ KESTL + + GG
Sbjct: 44 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGGG 77
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 270 IQKESTLHLVLRLRGG 317
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 498 IQKESTLHLVLRLRGG 545
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = +3
Query: 546 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLIF 680
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQD EGIPPD QRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGG 781
+ GK L DGRTLSDYN+ KESTL + + GG
Sbjct: 44 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGGG 77
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +3
Query: 90 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 270 IQKESTLHLVLRLRGG 317
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 498 IQKESTLHLVLRLRGG 545
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +3
Query: 546 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLIF 680
M I VKTLTGK I L+++ +D + +K ++++ EGIPP QRLI+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIY 45
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 84 TTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 263
T + + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 264 YNIQKESTLHLVLRL 308
Y IQ ++HLV L
Sbjct: 62 YKIQDGHSIHLVKTL 76
Score = 42.7 bits (96), Expect = 6e-05
Identities = 29/111 (26%), Positives = 49/111 (44%)
Frame = +3
Query: 318 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 497
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 498 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDXEG 650
IQ ++HL VKTL SD + V IQ +G
Sbjct: 64 IQDGHSIHL-----------VKTLGQNPAAAATNVSDRTQQVPTNIQAGQG 103
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 120 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 281
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 348 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 509
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 117 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 290
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 345 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 518
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 573 GKTITLEVEASDTIENVKAKIQDXEGIPPDXQRLI 677
GK LE+E ++T +K ++ +PP+ Q++I
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVI 44
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.26
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Frame = -2
Query: 652 IPSXS*IFAFTFSMVSDASTSSVMVL-PVSVFTKICMPPLRRNTKCRVDSF*ML*SDNVR 476
+PS + F+ T S + +ST S +L P SV + I P + + + S + SD
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAIL--PSSTSVEVSISSSSLSSSD--- 168
Query: 475 PSSSCLPAKINRC*SGGIPSLS*ILAFTFSMVSDASTSSVMVLPVSVFTKICIPPLKRNT 296
P +S + ++ S PS+S + TFS + STSS + SV + P ++
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSS 228
Query: 295 KWRVDSF*IL*SDNVRPSSSCFPAKISRC*SGGMPSLS*IFAFTFSMVSDASTSN 131
S + SSS + +S S S S + + S++S +S+S+
Sbjct: 229 TLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS---SSSSSIISSSSSSS 280
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 93 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 266
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 267 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 356
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 321 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 494
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 495 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 584
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.2
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
Frame = -2
Query: 433 SGGIPSLS*ILAFTFSMVSDASTSSVMVLPVSVFTK-----ICIPPLKRNTKWRVDSF*I 269
S IPS + + ++ S A++S VSV T + +PP +T SF
Sbjct: 146 STSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASSTS----SFST 201
Query: 268 L*SDNVRPSSSCFPAKISRC*SGGMPSLS*IFAFTFSMVSDASTSNVMVLPVRVFTKICM 89
+ + ++ PSSS F + G P + S++S AS S+ VLP + T
Sbjct: 202 ITNTSMIPSSSSFTT------TTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTST 255
Query: 88 VVSFWNSQKLLKLSQIVGHVVQLGSSST 5
V+ +S ++ GS++T
Sbjct: 256 PVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 48 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 188
+N N F ETT + L + + +++E + EN+K+ ++ K
Sbjct: 222 NNLNQIVRFIFETTADMIGIDLAKRQVPIQLERTSASENLKSNLKIK 268
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 614 NGVRCFNF*CDGFTGKCFHKDLHATS 537
+G + +N CD F GKCFHK ATS
Sbjct: 21 DGYKIYN--CDPF-GKCFHKIQGATS 43
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 404 LGFHILNGVRCFNF*CDGFTGKCFHKDLHSTS 309
L +G + +N CD F GKCFHK +TS
Sbjct: 15 LSIGTFDGYKIYN--CDPF-GKCFHKIQGATS 43
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 39 TICDNFN----NFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPD 206
T+ DNF+ NFC + +KT+ I VEA ++ + V I+D + PD
Sbjct: 164 TLSDNFDRLVLNFCRNIFQLVKSGHIKTIV--QIFKIVEAEESSDEVLKSIRDAKSSLPD 221
Query: 207 QQ 212
Q
Sbjct: 222 SQ 223
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 9.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 18 PSCTT-CPTICDNFNNFCEFQ---KETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQD 185
PSC+ ++ D+ N +Q +T + +VK + GKT L VE + +E KA + +
Sbjct: 202 PSCSRDVKSLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEE-KALVDE 260
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 9.8
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +3
Query: 48 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRL 218
++ NN+ + ++ ++K G T EV T+ + + +G P P +
Sbjct: 76 NSHNNYASIVGDASIGHYLK---GPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRST 132
Query: 219 IFAGKQLEDGRTLSDYNIQKESTLH 293
I A +G TL+ YN LH
Sbjct: 133 IVAPSLYSEGSTLNHYNNGSHQVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,718
Number of Sequences: 5004
Number of extensions: 60618
Number of successful extensions: 215
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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