Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27d12
         (818 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    386   e-109

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  386 bits (951), Expect = e-109
 Identities = 192/197 (97%), Positives = 192/197 (97%)
 Frame = +3

Query: 90  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 629
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 630 KIQDXEGIPPDXQRLIF 680
           KIQD EGIPPD QRLIF
Sbjct: 181 KIQDKEGIPPDQQRLIF 197



 Score =  304 bits (746), Expect = 2e-84
 Identities = 150/152 (98%), Positives = 150/152 (98%)
 Frame = +3

Query: 90  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 269
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 270 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 449
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 450 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 545
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 26/47 (55%), Positives = 28/47 (59%)
 Frame = +2

Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
           +  GK L DGRTLSDYN+  KESTL   V    GGM  F  K L GK
Sbjct: 44  IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 87



 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 26/47 (55%), Positives = 28/47 (59%)
 Frame = +2

Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXGGMPNFW*KXLXGK 817
           +  GK L DGRTLSDYN+  KESTL   V    GGM  F  K L GK
Sbjct: 120 IFAGKQLEDGRTLSDYNI-QKESTLHL-VLRLRGGMQIFV-KTLTGK 163



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +2

Query: 677 LLPGKXLXDGRTLSDYNLPXKESTLXFGVXVXXG 778
           +  GK L DGRTLSDYN+  KESTL   + +  G
Sbjct: 196 IFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGG 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,306
Number of Sequences: 2352
Number of extensions: 15227
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)