Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27d03
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 29 0.27
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 2.5
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 26 2.5
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 3.4
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 3.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 4.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 4.5
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 5.9
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 5.9
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 7.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 29.5 bits (63), Expect = 0.27
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 176 VRVTTNPNGAVYLLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYPLTK 355
V+ T + + LL++N S + A + + AP V + +RLIF GR + L
Sbjct: 138 VKDTNDLKDRIRLLHLNSSS-KLNAFLHDLINAPNVSAEMKENCVRLIFFGRKYDPFLRS 196
Query: 356 RVFALTL 376
R+F LT+
Sbjct: 197 RMFTLTI 203
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -3
Query: 468 HDNNIFFIMPSKTNAVIIYLFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 319
HD +F + A +IY+F TE Y V T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -3
Query: 357 RLVSGYENSRPININLRSITPSLNGTRG 274
RL+ YE S+PI I+L ++ S+N T+G
Sbjct: 984 RLLENYE-SKPICIDLLALDLSVNSTKG 1010
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 2.5
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 35 DIIIKSLA*NLSGPLSVCASMPVTDLVLLASK---VLRTDKMCHTCSSACVRVTTNPNGA 205
D II +L N G +++C P+T++ L +K V++ K + A V A
Sbjct: 104 DFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAA 163
Query: 206 VYLLYVN 226
+ +YV+
Sbjct: 164 EFNIYVD 170
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 348 SGYENSRPININLRSITPSLNG 283
+G + + I+INL +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 143 DKMCHTCSSACVRVTTNPNGAVY 211
DK +T SSA TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -3
Query: 450 FIMPSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPININLRSITPSLNGTRGA 271
F +P+ N +Y+ + + + + NA R+ +G +N+ RSI G
Sbjct: 349 FDLPAP-NKYALYVTNIKSGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIGNVSL 407
Query: 270 YVI 262
YV+
Sbjct: 408 YVL 410
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 4.5
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -3
Query: 429 NAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRP-ININLRSITPSLNGTRGAYVISCI 253
+ VIIY F E+ P V T S E+ P I ++ I ++ G ++SC
Sbjct: 92 STVIIYAFSQADENEPPQFVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGGGLVSCY 151
Query: 252 RAPRLYRDLFTYNKYTAPLGFVVT 181
L R+ N Y+ LG +T
Sbjct: 152 HGNPL-RERGIKNSYSHNLGEPIT 174
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 317 IFIGRLFSYPLTKRVFALTLYVGG-CSVSNL 406
+F GRL + P+ + FAL + +GG + SN+
Sbjct: 487 VFPGRLGTLPVFQNQFALPINIGGYANASNV 517
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 115 AFGFKGFAHRQNVPHLQLCLCARYHKSQRRSVLVVCK*ISIKARRAN 255
A+ + AH Q V H ++ + H S+ S VV S RAN
Sbjct: 89 AYEYFSIAHSQGVHHAEVFFDPQTHTSRGISYDVVVSGFSAACERAN 135
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 122 ASKVLRTDKMCHTCSSAC 175
+ KV R DK+C TC C
Sbjct: 183 SDKVPRVDKVCFTCGVNC 200
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 421 YHLFIQIRYRTSADIQC*CKNTFGERIRKQSADKY*SEVDNTVLERDTRSV 269
+H I Y +S DIQ C N R+ DK + VL+ D + V
Sbjct: 785 HHKVIGETYVSSFDIQQGCFNVIKRRLSSYKWDKSDDSFVSEVLKGDLKEV 835
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,960
Number of Sequences: 5004
Number of extensions: 37806
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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