Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c24
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    43   1e-05
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   1.8  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   3.1  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   4.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.5  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    24   5.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    23   7.3  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    23   9.6  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 96  KVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRXRHLMEDIK 275
           K+K     P  +DE+    PV+              +Q+VLV + RG+ +R RHL+ D+ 
Sbjct: 6   KLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLV 65

Query: 276 KLMPHHK 296
            +MPH K
Sbjct: 66  SMMPHSK 72


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60   KFKAMVKVK-KPSKVKQRITEPVTKDENVPLPPVRMSSD 173
            K K +V V  KPS V  ++    T DEN P+  V +  D
Sbjct: 1170 KSKVVVDVSTKPSGVGHQVLLLTTDDENAPISSVLIDFD 1208


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 153 PVRMSSDPAPKQVKWINRQRVLVFAMRGINHRXRHLMEDIK 275
           P     D +P++++W   Q      M+    R + LM+D++
Sbjct: 93  PSIYEGDVSPEELRWWAYQAKATNNMQAYEQRQKQLMDDVE 133


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 LDIRTGGKGTFSSLVTGSVIRCFTLEGFL 83
           L+I  GG GTFSSL+    +   TL+  L
Sbjct: 302 LNIPNGGIGTFSSLLIKGTMGYDTLQTLL 330


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 283 INFLISSIKCLXR*L--IPLIAKTSTLCLFIHFT 188
           ++ LI S+ C       IPLI   S LCLF +F+
Sbjct: 27  VDLLIPSLCCSLAVFPSIPLINTHSNLCLFSNFS 60


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 123 VTKDENVPLPPVRMSSDPAPKQVK-WINRQRVLVF 224
           V K  ++ + PV+  +  APK +K +IN+   L F
Sbjct: 178 VVKVHSIAITPVKGETSSAPKTIKLYINQPNNLSF 212


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 162 MSSDPAPKQVKWINRQRVLVFAMRGINHRXRHLMEDIKKL 281
           M + P+P  +K  N++R L  ++   N R     +++KK+
Sbjct: 566 MEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKV 605


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 110 SLFYFGRFFNFYHCFKFN 57
           SLF  G FF FY    FN
Sbjct: 250 SLFVIGNFFFFYEMGLFN 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,283
Number of Sequences: 5004
Number of extensions: 18445
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)