Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27c24
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054... 40 3e-04
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 27 2.7
02_02_0240 + 8196140-8198248,8198381-8198650 27 3.6
07_03_1188 + 24671022-24672482 26 4.7
05_01_0206 + 1487034-1489430 26 4.7
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 26 4.7
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 26 4.7
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 26 6.3
06_01_0677 + 4965813-4966220 25 8.3
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 25 8.3
>02_04_0434 -
22904790-22904927,22905220-22905318,22905404-22905472,
22905582-22905683,22905750-22905824,22906293-22906417,
22906511-22906589,22906933-22907074,22907200-22907441
Length = 356
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 201 NRQRVLVFAMRGINHRXRHLMEDIKKLMPHHK 296
N+++VLV R IN+R RHLM+++ L+PH K
Sbjct: 66 NKEKVLVTCSRRINYRYRHLMQNVVSLLPHAK 97
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 193 FTCLGAGSLDIRTGGKGTFSSLVTGSVIRC 104
FT +G +L + G KGT S VTG C
Sbjct: 139 FTVIGCNTLGLIGGYKGTVSHYVTGCYSYC 168
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 VPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRXRHLMEDIKKLMP 287
+P PP+ + P P + +N R AM H+ HLM+ + +MP
Sbjct: 543 LPRPPMPLLRPPQPLPL--VNVPRFQPSAMPYPPHQQPHLMQGVPHMMP 589
>07_03_1188 + 24671022-24672482
Length = 486
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 KAMVKVKKPSKVKQRITEP-VTKDENVPLPPVRMSSDPAPKQ 188
K VK KK KVK+R+T P + ++ L +RMS PK+
Sbjct: 440 KKYVKAKKEKKVKKRLTLPEKMRLKSKRLYKLRMSFVKKPKR 481
>05_01_0206 + 1487034-1489430
Length = 798
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 144 PLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINH 245
P P S P+P W R ++L+ A RGI++
Sbjct: 563 PKPNGSSSPSPSPVATSWKLRIKILLDASRGIDY 596
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 69 AMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVK 194
A++ V+ P+ + EP K+ P PP + P PK V+
Sbjct: 207 AVIIVEPPAPAPEPEPEPPKKEPPPPPPPKQEPCPPPPKVVE 248
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 90 PSKVKQRITEPVTKDENVPLP---PVRMSSDPAPKQV 191
P++ + +PVT EN+P P P R S A +QV
Sbjct: 110 PTQPQPEQQKPVTVQENLPAPTTAPARASQPAAARQV 146
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 105 QRITEPVTKDENVPLPPVRMSSDPAPKQ 188
+R E +K +N LPPV + DP P++
Sbjct: 357 KRSNEESSKAKNSKLPPVCLRVDPLPRK 384
>06_01_0677 + 4965813-4966220
Length = 135
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +3
Query: 192 KWINRQRVLVFAMRGIN----HRXRHLMEDIKKLMPHHK 296
+W+ R+ LV +RG+ HR L+ED+ + H K
Sbjct: 26 RWVARREKLVGQLRGVGSEEVHRLWELVEDLVGSVAHGK 64
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 90 PSKVKQRITEPVTKDENVPLPPVRMSSDPAP 182
P +R+ +P + + +PLPPV ++S P
Sbjct: 237 PRSPVKRMDDPRSPSQPLPLPPVPVASSSIP 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,418
Number of Sequences: 37544
Number of extensions: 111982
Number of successful extensions: 342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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