Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c24
         (301 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036741-1|AAH36741.1|  353|Homo sapiens brix domain containing ...    58   7e-09
BC006014-1|AAH06014.1|  335|Homo sapiens Unknown (protein for IM...    58   7e-09
BC001546-1|AAH01546.2|  353|Homo sapiens brix domain containing ...    58   7e-09
AY364244-1|AAQ76803.1|  353|Homo sapiens BRIX protein.                 58   7e-09
AY364243-1|AAQ76802.1|  129|Homo sapiens BRIX protein.                 58   7e-09
AK001962-1|BAA92003.1|  129|Homo sapiens protein ( Homo sapiens ...    58   7e-09
AF347667-1|AAL83818.1|  354|Homo sapiens BRIX protein.                 56   2e-08
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    31   0.88 
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    31   0.88 
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    31   0.88 
AL713888-4|CAI15118.1| 2136|Homo sapiens leukemia-associated pro...    29   2.7  
AL513534-3|CAH70220.1| 2136|Homo sapiens leukemia-associated pro...    29   2.7  
AF430147-1|AAM88301.1| 2136|Homo sapiens leukemia-associated pro...    29   2.7  
BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor, argini...    29   3.5  
BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor, argini...    29   3.5  
BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor, argini...    29   3.5  
BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor, argini...    29   3.5  
AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR pr...    29   3.5  
AL355990-1|CAI18927.1|  727|Homo sapiens solute carrier family 6...    28   4.7  
AL137790-2|CAI18832.1|  727|Homo sapiens solute carrier family 6...    28   4.7  

>BC036741-1|AAH36741.1|  353|Homo sapiens brix domain containing 2
           protein.
          Length = 353

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>BC006014-1|AAH06014.1|  335|Homo sapiens Unknown (protein for
           IMAGE:3683425) protein.
          Length = 335

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVKEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>BC001546-1|AAH01546.2|  353|Homo sapiens brix domain containing 2
           protein.
          Length = 353

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>AY364244-1|AAQ76803.1|  353|Homo sapiens BRIX protein.
          Length = 353

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>AY364243-1|AAQ76802.1|  129|Homo sapiens BRIX protein.
          Length = 129

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>AK001962-1|BAA92003.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11100 fis, clone PLACE1005550. ).
          Length = 129

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 245
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 246 RXRHLMEDIKKLMPHHK 296
           R RHLM+D++ LMPH K
Sbjct: 73  RTRHLMQDLRMLMPHSK 89


>AF347667-1|AAL83818.1|  354|Homo sapiens BRIX protein.
          Length = 354

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 192 KWINRQRVLVFAMRGINHRXRHLMEDIKKLMPHHK 296
           KW N++R+L+F+ RGIN R RHLM+D++ LMPH K
Sbjct: 55  KWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSK 89


>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 78  KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 209
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 441 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 484


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 78  KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 209
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 462 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 505


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 78  KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 209
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 445 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 488


>AL713888-4|CAI15118.1| 2136|Homo sapiens leukemia-associated
           protein with a CXXC domain protein.
          Length = 2136

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  AMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSS 170
           A VK   P K+KQ I E   K +  P PPV + S
Sbjct: 39  ASVKTLSPGKLKQLIQERDVKKKTEPKPPVPVRS 72


>AL513534-3|CAH70220.1| 2136|Homo sapiens leukemia-associated
           protein with a CXXC domain protein.
          Length = 2136

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  AMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSS 170
           A VK   P K+KQ I E   K +  P PPV + S
Sbjct: 39  ASVKTLSPGKLKQLIQERDVKKKTEPKPPVPVRS 72


>AF430147-1|AAM88301.1| 2136|Homo sapiens leukemia-associated
           protein with a CXXC domain protein.
          Length = 2136

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  AMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSS 170
           A VK   P K+KQ I E   K +  P PPV + S
Sbjct: 39  ASVKTLSPGKLKQLIQERDVKKKTEPKPPVPVRS 72


>BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor,
           arginine/serine-rich 15 protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDP 176
           + E VT +E  P PPV++SS+P
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEP 165


>BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor,
           arginine/serine-rich 15 protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDP 176
           + E VT +E  P PPV++SS+P
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEP 165


>BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor,
           arginine/serine-rich 15 protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDP 176
           + E VT +E  P PPV++SS+P
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEP 165


>BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor,
           arginine/serine-rich 15 protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDP 176
           + E VT +E  P PPV++SS+P
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEP 165


>AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR
           protein rA4 protein.
          Length = 1157

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDP 176
           + E VT +E  P PPV++SS+P
Sbjct: 154 VAENVTNNEGSPPPPVKVSSEP 175


>AL355990-1|CAI18927.1|  727|Homo sapiens solute carrier family 6,
           member 17 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 214 TLCLFIHFTCLGAGSLD-IRTGGKGT-FSSLVTGSVIRCFTLEGFL 83
           TLCL + ++ +G   +  I++ GK   FSSL    V+ CF + G L
Sbjct: 228 TLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLL 273


>AL137790-2|CAI18832.1|  727|Homo sapiens solute carrier family 6,
           member 17 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 214 TLCLFIHFTCLGAGSLD-IRTGGKGT-FSSLVTGSVIRCFTLEGFL 83
           TLCL + ++ +G   +  I++ GK   FSSL    V+ CF + G L
Sbjct: 228 TLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLL 273


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,181,253
Number of Sequences: 237096
Number of extensions: 639248
Number of successful extensions: 1659
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)