Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c24
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    48   2e-06
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   0.35 
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   0.82 
AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine re...    27   1.9  
Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical...    26   5.8  
AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical ...    25   7.6  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 153 PVRMSSDPAPKQVKWINRQRVLVFAMRGINHRXRHLMEDIKKLMPHHK 296
           P + + +   +   W NR+RVLV   RG + R R+LM+DIK L+PH K
Sbjct: 45  PKQATEETRKRAELWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAK 92


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 66  KAMVKVKKPSKVKQRITEPVTKDENVPL-----PPVRMSSDPAPKQVK 194
           KA VK + PS +K    +P  K E  P       PV  S DP+PK+ K
Sbjct: 729 KAPVKPRDPSPMKAVPIKPAPKTEVPPAVVKKPEPVAKSRDPSPKKAK 776


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGIN 242
           V +K P  +       +   E  P+   R  S P  KQV ++ + R+LV   R I+
Sbjct: 52  VTIKVPDTIAD--ANDLEPGERTPVSTPRAISPPIVKQVMYLQKPRILVMTQREIH 105


>AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein94 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 272 NIFH*MPXTMIDTSHRKDEYPLSVYPFHLFGCRITRHSYWR 150
           ++F+ +   MI+ + +  E PLS+ PFH++   I  + ++R
Sbjct: 88  SVFYNILYLMIEFNVKPCEPPLSLPPFHMYWINIVINDFFR 128


>Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical
           protein F53C11.5c protein.
          Length = 830

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 87  KPSKVKQRITEPVTKDENVP---LPPVRMSSDPAP 182
           +PS+  Q I  P ++  N+P   LP  R S+ PAP
Sbjct: 406 RPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAP 440


>Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
           protein F53C11.5b protein.
          Length = 891

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 87  KPSKVKQRITEPVTKDENVP---LPPVRMSSDPAP 182
           +PS+  Q I  P ++  N+P   LP  R S+ PAP
Sbjct: 467 RPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAP 501


>Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical
           protein F53C11.5a protein.
          Length = 855

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 87  KPSKVKQRITEPVTKDENVP---LPPVRMSSDPAP 182
           +PS+  Q I  P ++  N+P   LP  R S+ PAP
Sbjct: 431 RPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAP 465


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV 191
           V+   P+   +    P T  E  P P       PAP+ V
Sbjct: 262 VETPAPAPAAEETPAPATSSEEAPAPAPTAEETPAPETV 300


>AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical
           protein Y56A3A.19 protein.
          Length = 133

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 75  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAM 230
           V+    + V+QR+  P+      P   +R  S  AP   K +  + VLV ++
Sbjct: 15  VRALSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIVLVLSL 66


>AF099917-8|AAC68779.2|  457|Caenorhabditis elegans Hypothetical
           protein F54D10.8 protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 267 LPLNAXDDD*YLSSQRRVPSVCLSISPVW 181
           +P+N      YL   R+ P+ C+S+SP++
Sbjct: 429 VPVNCTTIARYLWESRQYPNPCISMSPIF 457


>Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical
           protein F30F8.3 protein.
          Length = 245

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 224 KDEYPLSVYPFHLFGCRITRHSYWR*RYIFIFSYGFSDSLFYFGR 90
           K+EYPL+ Y F        + S    R  F  S+GF+   + F R
Sbjct: 36  KEEYPLNDYLFDGINQESAQRSLLLCRQTFETSFGFALQSYVFKR 80


>AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical
           protein F45C12.8 protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 66  KAMVKVKKPSKVKQRITEPVTKDENVPLPPVR--MSSDPAPK 185
           K +  VKK  K  +R+T    + ++VP P +   ++S PA K
Sbjct: 191 KCIDGVKKALKSSRRVTSKSVETDSVPFPDIARLVASFPAEK 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,837,817
Number of Sequences: 27780
Number of extensions: 106299
Number of successful extensions: 408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)