Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c24
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   7.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 194  MDKQTEGTRLCDERYQSSSQAFNG 265
            + K T    LC  RYQ    A+NG
Sbjct: 1419 VQKYTLENLLCGSRYQIYVTAYNG 1442


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 180 PKQVKWINRQR 212
           P+ +KW NR+R
Sbjct: 475 PRYIKWTNRER 485


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 ITEPVTKDENVPLPPVRMSSDPA 179
           I EPV +  + P P  R++S P+
Sbjct: 500 IHEPVVETNSSPSPNPRIASAPS 522


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 39 IKDNSSLTPDSIF 1
          I   S LTPDS+F
Sbjct: 50 IDAGSCLTPDSVF 62


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 208 CLFIHFTCLGAGSLDIRTGGKGTFSSLVTGSVI 110
           C+F      G G   ++T  KG+F +   G VI
Sbjct: 498 CIFRTANGRGWGVKTMKTIKKGSFVTQYVGEVI 530


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 39 IKDNSSLTPDSIF 1
          I   S LTPDS+F
Sbjct: 50 IDAGSCLTPDSVF 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,595
Number of Sequences: 438
Number of extensions: 1143
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)