Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c23
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    30   0.28 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.1  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   8.0  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   8.0  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 RSLSPSARAWQNTYSALYNVHSSAKRLLTNFSLPIIVRIVLSHLT 454
           RSLS     W +  S +YN  SS + ++     P  VR+ L  LT
Sbjct: 343 RSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTLT 387


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 527  HRRRRRQRTEILVVNRLLIGNTLEWSDVT 441
            H RR  +R    VVN   +GNT  ++ VT
Sbjct: 1264 HTRRNGERNRFSVVNGCFLGNTYAFASVT 1292


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 424 NCANCVVTSDHSKVFPMS 477
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 85  LRSV*MLDVVLHLPNS 38
           LRS  +LD+VLH PNS
Sbjct: 221 LRSDNILDIVLHYPNS 236


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 552 ELVRKLESAQKKTTTTHRNISSKPAAHWKYFGVV 451
           ++V  + SAQ++    +  +SS  A  +K FG+V
Sbjct: 265 DIVSNIGSAQREIVKFYERMSSNRALLFKIFGIV 298


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 270 VYENSRRFEFINPDEIASGKRLIIKHLQDESQSDI 166
           ++E  RR++ +NP+ + S    ++  +QD  + +I
Sbjct: 124 IFEIGRRYKVLNPNRLGSTYGKLMYFVQDSMRPEI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,022
Number of Sequences: 5004
Number of extensions: 46642
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)