Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27c23
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 33 0.15
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 33 0.15
Z48809-5|CAE17927.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.59
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 27 7.3
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 27 7.3
Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 27 9.6
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 346 LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 504
L++ +LGVV A +G Y++F C N + S + +SS + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
C02F4.1 protein.
Length = 1781
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 346 LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 504
L++ +LGVV A +G Y++F C N + S + +SS + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 346 LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFTTNISV 504
L++ +LGVV A +G Y++F C N + S + +SS + +
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSSLIIEQVEI 1592
>Z48809-5|CAE17927.1| 205|Caenorhabditis elegans Hypothetical
protein T01E8.8 protein.
Length = 205
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 576 RKKNEIIAELVRKLESAQKKTTTTHRNISSKPAAHWKYFGVVRCD 442
RK + E +KL+ ++ +T R +S+KP H +GVV CD
Sbjct: 136 RKYGKAFHERQKKLK---RQASTPKREMSTKPIGHLTLYGVVDCD 177
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 13 NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 162
+PST++ NL+ ERH +Q+ S +L ++ ++ S + +++G
Sbjct: 167 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 216
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 13 NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 162
+PST++ NL+ ERH +Q+ S +L ++ ++ S + +++G
Sbjct: 1546 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 1595
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 563 KLLPSWLENSKVHRRRRRQRTEILVVNRLLIGNTLEWSDVTTQFAQLLAT 414
+L SWLE+ K+ R + L G+TL W +T Q T
Sbjct: 324 ELKKSWLEDVKLMADRIKSMRTALKDGLKAEGSTLNWDHITNQIGMFCFT 373
>Z68011-2|CAA92013.2| 381|Caenorhabditis elegans Hypothetical
protein T21B6.2 protein.
Length = 381
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -1
Query: 411 KFVRRRL-AELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRVIVYENSRRFEFIN 235
KF+RRR + +++ + + ++ +D D+ + S+ TA F P + N +F F
Sbjct: 68 KFLRRRYQGSVLPVFDRKKISIRS-SDADRAIETAQSVATALFPPDGLQVWNEEKFRFWQ 126
Query: 234 PDEI-ASGK 211
P I +GK
Sbjct: 127 PIPIRTNGK 135
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 572 KRTKLLPSWLENSKVHRRRRRQR 504
++T+LLP W+ N ++R R+ Q+
Sbjct: 1108 EKTQLLPKWVTNFFINRSRKAQK 1130
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 572 KRTKLLPSWLENSKVHRRRRRQR 504
++T+LLP W+ N ++R R+ Q+
Sbjct: 1106 EKTQLLPKWVTNFFINRSRKAQK 1128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,932
Number of Sequences: 27780
Number of extensions: 264092
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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