Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c23
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -1

Query: 534 ESAQKKTTTTHRNISSKPAAHWKYFGVVRCDNTIRTIIGN 415
           +  Q++    H  +  +PAA W     V  D  +++ +G+
Sbjct: 453 QQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGS 492


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 486 KPAAHWKYFGVVRCDN 439
           +PAA+W Y+    C N
Sbjct: 208 RPAANWGYYAYPYCYN 223


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 231 DEIASGKRLIIKHLQDESQS 172
           + I SGK + ++HL++E  S
Sbjct: 629 ENIYSGKLISMRHLKEEVSS 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,260
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)