Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27c14
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   3.4  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   4.5  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   7.8  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   7.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 121 RHGLH-LSKFKNAFASVSTTFVHHPI 195
           R GL   SKF  AFAS+S+ F+H+ +
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLHYQL 64


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 289 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 182
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 428 EIANEVCREENVISSVIVIGDDGKS 354
           EIANEVC +E        I D+GK+
Sbjct: 5   EIANEVCVDEKQDRDAEEIEDEGKN 29


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 283 QNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRLQRHF 149
           Q+ R + ++++FD   +R A I+      R+D  + L KR++  F
Sbjct: 692 QHSRQMLLYNLFDIAQSRKAPILIIGLTTRYDCSESLEKRVKSRF 736


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 299 CSFADQLLSTFIANNYLCYFY 361
           C + +   S F AN  LCYFY
Sbjct: 344 CGYYELAWSIFQANMELCYFY 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,415
Number of Sequences: 5004
Number of extensions: 39177
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)